View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17989_high_2 (Length: 379)
Name: NF17989_high_2
Description: NF17989
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17989_high_2 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 379; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 1 - 379
Target Start/End: Complemental strand, 30346539 - 30346161
Alignment:
| Q |
1 |
taaacattagggtgttttgttattagctttgaatacgcttcatgaagcaaaggatgacctttgtctttaactaatctccctgctacaccaagtactaaac |
100 |
Q |
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| T |
30346539 |
taaacattagggtgttttgttattagctttgaatacgcttcatgaagcaaaggatgacctttgtctttaactaatctccctgctacaccaagtactaaac |
30346440 |
T |
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| Q |
101 |
ttgcattgcttggaatcccaattttggttctaaatttccttcccaattcagcatcttctccaaactcatcctcatcaaccccattaacaatcacatgcac |
200 |
Q |
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| T |
30346439 |
ttgcattgcttggaatcccaattttggttctaaatttccttcccaattcagcatcttctccaaactcatcctcatcaaccccattaacaatcacatgcac |
30346340 |
T |
|
| Q |
201 |
tcttcttgtaggaatttgatagaaatctcttagcatctcaccacagctatcactaatagcaacatgatgagcataactcttaaagaatcttatctcattc |
300 |
Q |
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| T |
30346339 |
tcttcttgtaggaatttgatagaaatctcttagcatctcaccacagctatcactaatagcaacatgatgagcataactcttaaagaatcttatctcattc |
30346240 |
T |
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| Q |
301 |
agaaccttaggaacaattccctgcaagctattgttgaaaagaggtgaaataggttcatcaggtcttctagctaaatcct |
379 |
Q |
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| T |
30346239 |
agaaccttaggaacaattccctgcaagctattgttgaaaagaggtgaaataggttcatcaggtcttctagctaaatcct |
30346161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 133; Significance: 5e-69; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 16 - 316
Target Start/End: Original strand, 10841118 - 10841418
Alignment:
| Q |
16 |
tttgttattagctttgaatacgcttcatgaagcaaaggatgacctttgtctttaactaatctccctgctacaccaagtactaaacttgcattgcttggaa |
115 |
Q |
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|||||||| ||| ||||| | ||||||||||| || ||||||||||| || || |||||||| || ||||| |||| ||||||||| ||||| ||||||| |
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| T |
10841118 |
tttgttataagccttgaaaatgcttcatgaagtaatggatgacctttatcctttactaatcttccagctactccaaatactaaactagcattacttggaa |
10841217 |
T |
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| Q |
116 |
tcccaattttggttctaaatttccttcccaattcagcatcttctccaaactcatcctcatcaaccccattaacaatcacatgcactcttcttgtaggaat |
215 |
Q |
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| T |
10841218 |
tcccaattttggttctaaactcttttcctaattcagcatcttctctaaaatcttcctcgtcaacaccattgagaatcacatgaactcttctacttggaat |
10841317 |
T |
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| Q |
216 |
ttgatagaaatctcttagcatctcaccacagctatcactaatagcaacatgatgagcataactcttaaagaatcttatctcattcagaaccttaggaaca |
315 |
Q |
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| T |
10841318 |
ttggtaaacatctcttaacatctcaccacaactatcactaatagcaacatgatgagaatatttgttgaagaatcttatctcatttagaaccttaggaaca |
10841417 |
T |
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| Q |
316 |
a |
316 |
Q |
| |
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| T |
10841418 |
a |
10841418 |
T |
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