View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17989_high_4 (Length: 267)

Name: NF17989_high_4
Description: NF17989
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17989_high_4
NF17989_high_4
[»] chr7 (2 HSPs)
chr7 (1-267)||(41740261-41740527)
chr7 (71-267)||(5224884-5225083)
[»] chr5 (2 HSPs)
chr5 (3-267)||(35967908-35968171)
chr5 (72-267)||(38922094-38922289)
[»] chr2 (1 HSPs)
chr2 (68-267)||(4754051-4754250)
[»] chr6 (1 HSPs)
chr6 (81-267)||(30758169-30758355)
[»] chr1 (1 HSPs)
chr1 (156-267)||(35062940-35063052)


Alignment Details
Target: chr7 (Bit Score: 226; Significance: 1e-124; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 1 - 267
Target Start/End: Complemental strand, 41740527 - 41740261
Alignment:
Q  1 tcccgcaaccgtatcagttttgcagtcgcagagcctgaaaccaaaaacctcaaatacctaaattgattccagaaagctccatccaccaataatttgtatc 100  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||    
T  41740527 tcccgcaaccgtatcagttttgcagtcgcagagcctgaaatcaaaaacctcaaatacctaaattgattccataaagctccacccaccaataatttgtatc 41740428  T
Q  101 aatcccaaatctgttgtagattctcacccacaaattctaatcacttataaatttataaaacattcatttcggtccaaattctaatagacaaggnnnnnnn 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||           
T  41740427 aatcccaaatctgttgtagattctcacccacaaattctaatcacttataaatttataaagcattcatttcggtccaaattctaatagacaaggaaaaaaa 41740328  T
Q  201 ttggggttatttaaaaaagatgaaaagttaattcgaaatttattgttgagattgttggtgttgatga 267  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  41740327 ttggggttatttaaaaaagatgaaaaattaattcgaaatttattgttgagattgttggtgttgatga 41740261  T

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Target: chr7; HSP #2
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 71 - 267
Target Start/End: Original strand, 5224884 - 5225083
Alignment:
Q  71 agaaagctccatccaccaataatttgtatcaatcccaaatctgttgtagattctcacccacaaattctaatcacttataaat-ttataaaacattcattt 169  Q
    ||||||| |||||||||||||||||||||||||| |||||||||||| |||||||||||| ||||||  | ||||||||||| || |||| |||||||||    
T  5224884 agaaagccccatccaccaataatttgtatcaatctcaaatctgttgtggattctcacccaaaaattcccaccacttataaatattttaaagcattcattt 5224983  T
Q  170 cggtccaaattctaatagacaaggnnnnnnnttggggttatttaaaaaagatgaaaagttaattcgaaattt-at--tgttgagattgttggtgttgatg 266  Q
    | |||||| |||||||||||  ||        ||||||||||||||||||| ||||| |||||| ||||||| ||  |||| ||||||||||||||||||    
T  5224984 cagtccaatttctaatagac-cgggaaaaaaatggggttatttaaaaaagaagaaaatttaattagaaatttgatgctgtttagattgttggtgttgatg 5225082  T

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Target: chr5 (Bit Score: 196; Significance: 1e-107; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 3 - 267
Target Start/End: Original strand, 35967908 - 35968171
Alignment:
Q  3 ccgcaaccgtatcagttttgcagtcgcagagcctgaaaccaaaaacctcaaatacctaaattgattccagaaagctccatccaccaataatttgtatcaa 102  Q
    ||||||||||||||||||||||| |||||||||| |||||||||||||||||||||| ||||||||  ||||||||| ||||||||||||||||||||||    
T  35967908 ccgcaaccgtatcagttttgcagccgcagagcct-aaaccaaaaacctcaaataccttaattgattttagaaagctcaatccaccaataatttgtatcaa 35968006  T
Q  103 tcccaaatctgttgtagattctcacccacaaattctaatcacttataaatttataaaacattcatttcggtccaaattctaatagacaaggnnnnnnntt 202  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||       ||    
T  35968007 tcccaaatctgttgtagattctcacccacaaattctaatcacttataaatttataaagcattcatttcggttcaaattctaatagacaaggaaaaaaatt 35968106  T
Q  203 ggggttatttaaaaaagatgaaaagttaattcgaaatttattgttgagattgttggtgttgatga 267  Q
    |||||||||||||||||||||||| |||||||||||||| |||||||||||||| ||||||||||    
T  35968107 ggggttatttaaaaaagatgaaaaattaattcgaaatttgttgttgagattgtttgtgttgatga 35968171  T

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Target: chr5; HSP #2
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 72 - 267
Target Start/End: Complemental strand, 38922289 - 38922094
Alignment:
Q  72 gaaagctccatccaccaataatttgtatcaatcccaaatctgttgtagattctcacccacaaattctaatcacttataaatttataaaacattcatttcg 171  Q
    ||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| |||||||||||||||||||||||||||| |||| ||||||    
T  38922289 gaaagctccatccaccaataatttgtatcaatctcaaatatgttgtagattctcacccataaattctaatcacttataaatttataaagcatttatttcg 38922190  T
Q  172 gtccaaattctaatagacaaggnnnnnnnttggggttatttaaaaaagatgaaaagttaattcgaaatttattgttgagattgttggtgttgatga 267  Q
    ||||||||||||||||||||||       |||||||||||||||||| ||||||| ||||||| ||||||||||||||||||||||||||||||||    
T  38922189 gtccaaattctaatagacaaggaaaaaaattggggttatttaaaaaaaatgaaaaattaattcaaaatttattgttgagattgttggtgttgatga 38922094  T

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Target: chr2 (Bit Score: 135; Significance: 2e-70; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 68 - 267
Target Start/End: Original strand, 4754051 - 4754250
Alignment:
Q  68 tccagaaagctccatccaccaataatttgtatcaatcccaaatctgttgtagattctcacccacaaattctaatcacttataaatttataaaacattcat 167  Q
    |||||||||||||||||||||||||| | |||||||| ||||| ||||||||||||||||||||||||||| ||||||||||||||| |||| |||||||    
T  4754051 tccagaaagctccatccaccaataatctctatcaatctcaaatatgttgtagattctcacccacaaattctcatcacttataaatttttaaagcattcat 4754150  T
Q  168 ttcggtccaaattctaatagacaaggnnnnnnnttggggttatttaaaaaagatgaaaagttaattcgaaatttattgttgagattgttggtgttgatga 267  Q
    || |||||||||||||||| ||||||       |||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||    
T  4754151 tttggtccaaattctaataaacaaggaaaaaaattggggttatttaaaaaagatgaaaatttaattcgaaatttgttgttgagattgttggtgttgatga 4754250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 81 - 267
Target Start/End: Complemental strand, 30758355 - 30758169
Alignment:
Q  81 atccaccaataatttgtatcaatcccaaatctgttgtagattctcacccacaaattctaatcacttataaat-ttataaaacattcatttcggtccaaat 179  Q
    ||||||||||||||| ||||||||||||||  |||||||||||||||||  ||||||| |||||  |||||| ||  ||| |||| | ||| |||| | |    
T  30758355 atccaccaataatttatatcaatcccaaattcgttgtagattctcaccccaaaattcttatcacacataaatattcaaaagcattta-ttcagtcctatt 30758257  T
Q  180 tctaatagacaaggnnnnnnnttggggttatttaaaaaagatgaaaagttaattcgaaatttattgttgagattgttggtgttgatga 267  Q
    |||||||||| | |       || ||||||||||||||||| ||||| ||||||  ||| || ||| ||||||||||| || ||||||    
T  30758256 tctaatagaccaaggaaaaaatttgggttatttaaaaaagaagaaaatttaattgaaaagttgttgatgagattgttgatggtgatga 30758169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 156 - 267
Target Start/End: Original strand, 35062940 - 35063052
Alignment:
Q  156 taaaacattcatttcggtccaaattctaatagacaaggnnnnnnn-ttggggttatttaaaa-aagatgaaaagttaattcgaaatttattgttgagatt 253  Q
    |||| ||||||||||||| ||||||||||||||| |||        ||||||||||| |||| |||||||||| |||||||||||||| || |||||||     
T  35062940 taaagcattcatttcggttcaaattctaatagacgaggaaaaaaaattggggttattcaaaaaaagatgaaaaattaattcgaaatttgtt-ttgagata 35063038  T
Q  254 gttggtgttgatga 267  Q
    ||| ||||||||||    
T  35063039 gttagtgttgatga 35063052  T

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