View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17989_high_5 (Length: 241)
Name: NF17989_high_5
Description: NF17989
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17989_high_5 |
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Alignment Details
Target: chr5 (Bit Score: 172; Significance: 1e-92; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 35968192 - 35968418
Alignment:
| Q |
1 |
ccactgttgatgaaaatttatttagaaatttgt---tgttgctctctctgtttcaccattttagtatggagaatttgttgttgttctctctctaaaccta |
97 |
Q |
| |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
35968192 |
ccactgttgatgaaaatttatttagaaatttgttgttgttgctctctctgtttcaccattttagtatagagaatttgttgttgttctctctctaaacctg |
35968291 |
T |
|
| Q |
98 |
cgcaaaataagcaggataacaaccnnnnnnntgcagttgcaccttatgaaaagcgagcaacaaaaatcagtaaacaaacacaaccaactgtaggctaaac |
197 |
Q |
| |
|
|||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35968292 |
cgcaaaataagcaggataacaaccaaaaaactgcagctgcaccttatgaaaagcgagcaacaaaaatcagtaaacaaacacaaccaactgtaggctaaac |
35968391 |
T |
|
| Q |
198 |
actgccacacagttggacagtctgtgt |
224 |
Q |
| |
|
|| |||||||||||||||||| ||||| |
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|
| T |
35968392 |
accgccacacagttggacagtttgtgt |
35968418 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 38922073 - 38921846
Alignment:
| Q |
1 |
ccactgttgatgaaaatttatttagaaatttgttgttg---ctctctctgtttcaccattttagtatggagaatttgttgttgttctctctctaaaccta |
97 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
38922073 |
ccactgttgatgaaaatttatttagaaatttgttgttgttgctctctctgtttcaccattttagtatggagaatttgttgttgttctctctctaaacctg |
38921974 |
T |
|
| Q |
98 |
cgcaaaataagcaggataacaacc-nnnnnnntgcagttgcaccttatgaaaagcgagcaacaaaaatcagtaaacaaacacaaccaactgtaggctaaa |
196 |
Q |
| |
|
|||||||||||||||||||||||| | ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38921973 |
cgcaaaataagcaggataacaaccaaaaaaactacagctgcaccttatgaaaagcgagcaacaaaaatcagtaaacaaacacaaccaactgtaggctaaa |
38921874 |
T |
|
| Q |
197 |
cactgccacacagttggacagtctgtgt |
224 |
Q |
| |
|
|||||||||||||||||||||| ||||| |
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|
| T |
38921873 |
cactgccacacagttggacagtttgtgt |
38921846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 161; Significance: 5e-86; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 41740240 - 41740013
Alignment:
| Q |
1 |
ccactgttgatgaaaatttatttagaaatttgttgttg---ctctctctgtttcaccattttagtatggagaatttgttgttgttctctctctaaaccta |
97 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
41740240 |
ccactgttgatgaaaatttatttagaaatttgttgttgttgctctctttgtttcaccattttagtatggagaatttgttgttgttctctctctaaacctg |
41740141 |
T |
|
| Q |
98 |
cgcaaaataagcaggataacaacc-nnnnnnntgcagttgcaccttatgaaaagcgagcaacaaaaatcagtaaacaaacacaaccaactgtaggctaaa |
196 |
Q |
| |
|
||||||||||||| |||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
41740140 |
cgcaaaataagcaagataacaaccaaaaaaactgcagctgcaccttatgaaaagcgagcaacaaaaatcagtaaacaaacacaaccaattgtaggctaaa |
41740041 |
T |
|
| Q |
197 |
cactgccacacagttggacagtctgtgt |
224 |
Q |
| |
|
|||||||||||||||||||||| ||||| |
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|
| T |
41740040 |
cactgccacacagttggacagtttgtgt |
41740013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 145; Significance: 2e-76; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 35063073 - 35063300
Alignment:
| Q |
1 |
ccactgttgatgaaaatttatttagaaattt---gttgttgctctctctgtttcaccattttagtatggagaatttgttgttgttctctctctaaaccta |
97 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||| |||||||||||||||||||||||||||| |||||||| |
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| T |
35063073 |
ccactgttgatgaaaatttatttagaaattttctgttgttgctctctctgtttcatcatttcagtatggagaatttgttgttgttctctccctaaacctg |
35063172 |
T |
|
| Q |
98 |
cgcaaaataagcaggataacaacc-nnnnnnntgcagttgcaccttatgaaaagcgagcaacaaaaatcagtaaacaaacacaaccaactgtaggctaaa |
196 |
Q |
| |
|
| ||||||||||||||||| |||| ||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35063173 |
cacaaaataagcaggataaaaaccaaaaaaactgcagctacaccttatgaaaagcgagcaacaaaaatcagtaaacaaacacaaccaactgtaggctaaa |
35063272 |
T |
|
| Q |
197 |
cactgccacacagttggacagtctgtgt |
224 |
Q |
| |
|
||| |||||||||||||||||| ||||| |
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|
| T |
35063273 |
cacggccacacagttggacagtttgtgt |
35063300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 160 - 213
Target Start/End: Original strand, 14512054 - 14512107
Alignment:
| Q |
160 |
aaaatcagtaaacaaacacaaccaactgtaggctaaacactgccacacagttgg |
213 |
Q |
| |
|
|||| |||||||||||| |||||||||| | |||||| |||||| ||||||||| |
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|
| T |
14512054 |
aaaaccagtaaacaaacccaaccaactgaacgctaaaaactgccgcacagttgg |
14512107 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 86; Significance: 3e-41; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 135 - 224
Target Start/End: Complemental strand, 30830406 - 30830317
Alignment:
| Q |
135 |
tgcaccttatgaaaagcgagcaacaaaaatcagtaaacaaacacaaccaactgtaggctaaacactgccacacagttggacagtctgtgt |
224 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
30830406 |
tgcaccttatgaaaagcgagcaacaaaaatcagtaaacaaacacaaccaactgtaggctaaacactgccacacagttggacagtttgtgt |
30830317 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 70; Significance: 1e-31; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 129 - 218
Target Start/End: Original strand, 4754489 - 4754578
Alignment:
| Q |
129 |
tgcagttgcaccttatgaaaagcgagcaacaaaaatcagtaaacaaacacaaccaactgtaggctaaacactgccacacagttggacagt |
218 |
Q |
| |
|
||||| ||||||||||||||| || |||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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|
| T |
4754489 |
tgcagctgcaccttatgaaaaacgggcaacagaaatcagtaaacaaacacaaccaactgtaggctaaacactgccgcacagttggacagt |
4754578 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 5 - 72
Target Start/End: Original strand, 4754275 - 4754345
Alignment:
| Q |
5 |
tgttgatgaaaatttatttagaaatttgt---tgttgctctctctgtttcaccattttagtatggagaatt |
72 |
Q |
| |
|
|||| |||||||||||||||||||||||| ||||||||||| ||||||| ||||| ||||||||||||| |
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|
| T |
4754275 |
tgttaatgaaaatttatttagaaatttgttgttgttgctctctatgtttcatcatttcagtatggagaatt |
4754345 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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