View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17989_low_1 (Length: 395)
Name: NF17989_low_1
Description: NF17989
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17989_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 293; Significance: 1e-164; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 1 - 379
Target Start/End: Original strand, 11119295 - 11119678
Alignment:
| Q |
1 |
aatgggtaatattggcgtgcttactggaaagaaaggagaaattagaaagcagtgcaattttgttaacaagaaatcttctgaattggatcttgctagtgtg |
100 |
Q |
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| T |
11119295 |
aatgggtaatattggcgtgcttactggaaagaaaggagaaattagaaagcagtgcaattttgttaacaagaaatcttctgaattggatcttgctagtgtg |
11119394 |
T |
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| Q |
101 |
gcctcagaatcaatggagggggatatggttagttcaatctaaatgaatgtgggttactttagttgaaatgcatgtggtgattggaattcactaataaaga |
200 |
Q |
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| T |
11119395 |
acctcagaatcaatggagggggatatggttagttcaatctaaatgaatgtgggttactttagttgaaatgcatgtggtgattggaattcactaataaaga |
11119494 |
T |
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| Q |
201 |
aaagtgctagctaggcacatctgtgccttgatgtgtatgttatgtgctttatgtgtgcaagataaccnnnnnnnnnnctaagtaattttc-----attat |
295 |
Q |
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| T |
11119495 |
aaagtgctagctaggcacatctgtgccttgatgtgtatgttatgtgctttatgtgtgcaagataatcttttttttttctaagtaattttcattatattat |
11119594 |
T |
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| Q |
296 |
agtatatcctctctttccgtcacaagttatgtctgtgnnnnnnncaacattccccattattagataatcatcctcttgcatcca |
379 |
Q |
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| T |
11119595 |
agtatatcctctctttccgtcacaagttatgtctttgtttttttcaacatttcccattattagatgatcatcctcttgcatcca |
11119678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 11111524 - 11111747
Alignment:
| Q |
1 |
aatgggtaatattggcgtgcttactggaaagaaaggagaaattagaaagcagtgcaattttgttaacaagaaatcttctgaattggatcttgctagtgtg |
100 |
Q |
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| T |
11111524 |
aatgggtaatattgatgtgcttaccggaaagaaaggagaaattagaaaacaatgcaattttattaacaagaaatcttctgaattggatcttggcattgtg |
11111623 |
T |
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| Q |
101 |
gcct---cagaatcaatggagggggatatggttagttcaatctaaatgaatgtgggttactttagttgaaatgcatgtggtgattggaattcactaataa |
197 |
Q |
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|||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||| |
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| T |
11111624 |
gcctctgcagaatcaatggaaggggatatggttagttcaatctaaatgaatgtgggttactttagatgaa----atgtggtgattggaattcactaataa |
11111719 |
T |
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| Q |
198 |
agaaaagtgctagctaggcacatctgtg |
225 |
Q |
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||| ||||||| |||| |||||| |||| |
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| T |
11111720 |
agagaagtgctggctaagcacatttgtg |
11111747 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 1 - 147
Target Start/End: Complemental strand, 10793270 - 10793121
Alignment:
| Q |
1 |
aatgggtaatattggcgtgcttactggaaagaaaggagaaattagaaagcagtgcaattttgttaacaagaaatcttctgaattggatcttgctagtgtg |
100 |
Q |
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||||||||||||||| |||||||| ||||||||||||||||| || || || ||||||||||||||||| ||||||||||| || |||||||| | || |
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| T |
10793270 |
aatgggtaatattggtgtgcttaccggaaagaaaggagaaataaggaaacaatgcaattttgttaacaaaaaatcttctgagttagatcttgccgctctg |
10793171 |
T |
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| Q |
101 |
g---cctcagaatcaatggagggggatatggttagttcaatctaaatgaa |
147 |
Q |
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| || |||||||| | || |||||||||||||||||||| |||||||| |
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| T |
10793170 |
gtctccacagaatcatttgatggggatatggttagttcaatttaaatgaa |
10793121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 11137834 - 11137899
Alignment:
| Q |
1 |
aatgggtaatattggcgtgcttactggaaagaaaggagaaattagaaagcagtgcaattttgttaa |
66 |
Q |
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||||||||||||||| ||||| || || || |||||||| |||||||| || |||||||||||||| |
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| T |
11137834 |
aatgggtaatattggtgtgctgaccgggaaaaaaggagagattagaaaacattgcaattttgttaa |
11137899 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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