View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17989_low_4 (Length: 306)
Name: NF17989_low_4
Description: NF17989
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17989_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 17 - 296
Target Start/End: Original strand, 33163526 - 33163805
Alignment:
| Q |
17 |
ataaactggttaatgttcgtttctatgctcttgagaagaatgtgttggtggttattttgcaggtactttctgaaggctggatatgctgttatctttttgc |
116 |
Q |
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| T |
33163526 |
ataaactggttaatgttcgtttctatgctcttgagaagaatgtgttggtggttattttgcaggtactttctgaaggctggatatgctgttatctttttgc |
33163625 |
T |
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| Q |
117 |
accgtaggtaaatttcttatcatgtaatttatccttttctcacgtttgatgtgttgatttaccaatgaataattatgcagggggagttaccagccatttt |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33163626 |
accgtaggtaaatttcttatcatgtaatttatccttttctcatgtttgatgtgttgatttaccaatgaataattatgcagggggagttaccagccatttt |
33163725 |
T |
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| Q |
217 |
gcagatccattcctgatgatcccttacttgaatgcttcgagccaaccaacgatttaaatattcaaggttttccatctctg |
296 |
Q |
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| T |
33163726 |
gcagatccattcctgatgatcccttacttgaatgcttcgagctgaccaacgatttaaatattcaaggttttccatttctg |
33163805 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 79; Significance: 6e-37; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 162 - 288
Target Start/End: Complemental strand, 46162427 - 46162302
Alignment:
| Q |
162 |
ttgatgtgttgatttaccaatgaataattatgcagggggagttaccagccattttgcagatccattcctgatgatcccttacttgaatgcttcgagccaa |
261 |
Q |
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| T |
46162427 |
ttgatgtgttaatt-accaatgaatatttatgcaggggaagtttccagccattttgcagatcccttcccgaggatcccttacttgaatgcttcgagccca |
46162329 |
T |
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| Q |
262 |
ccaacgatttaaatattcaaggttttc |
288 |
Q |
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| T |
46162328 |
ccaacgacttaaacattcaaggttttc |
46162302 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 63 - 133
Target Start/End: Complemental strand, 46162558 - 46162488
Alignment:
| Q |
63 |
ggtggttattttgcaggtactttctgaaggctggatatgctgttatctttttgcaccgtaggtaaatttct |
133 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||| || |||| |||||||||||| |
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| T |
46162558 |
ggtggttactttgcaggtactttctgaaggctggatatgctgttatctttctgtaccggaggtaaatttct |
46162488 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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