View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17989_low_8 (Length: 233)
Name: NF17989_low_8
Description: NF17989
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17989_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 16 - 218
Target Start/End: Complemental strand, 33778111 - 33777909
Alignment:
| Q |
16 |
aaaatggtcttgctaagggtgtcaaaggtatggctggtcttggaaggactaaagtgtcacttccttcacagttttcatcagcttttagtttcaagaataa |
115 |
Q |
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| T |
33778111 |
aaaatggtcttgctaagggtgtcaaaggtatggctggtcttggaaggactaaagtgtcacttccttcacagttttcatcagcttttagtttcaagaataa |
33778012 |
T |
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| Q |
116 |
atttgcaatttgtttaggtactcaaaatggtgtacttttctttggtgatggaccttatctattcaactttgatgaatctaaaaatcttatttacacacct |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33778011 |
atttgcaatttgtttaggtactcaaaatggtgtacttttctttggtgatggaccttatctattcaactttgatgaatctaaaaatcttatttacacacct |
33777912 |
T |
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| Q |
216 |
ctt |
218 |
Q |
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||| |
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| T |
33777911 |
ctt |
33777909 |
T |
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