View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1798_high_11 (Length: 397)
Name: NF1798_high_11
Description: NF1798
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1798_high_11 |
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Alignment Details
Target: chr6 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 17 - 387
Target Start/End: Complemental strand, 1331995 - 1331622
Alignment:
| Q |
17 |
agcatgttatcttgcatactcaacaatgaata---ctatcttataaagacacaaaatttaaaagtttacatttccatttgagagtgaaactgatgcttgt |
113 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1331995 |
agcatgttatcttgcatactcaacaatgaatagtactatcttataaagacacaaaatttaaaagtttacatttccatttgagagtgaaactgatgcttgt |
1331896 |
T |
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| Q |
114 |
actcctgaagttgactgtattcttcccagtccccacttccctcttggttgcttacaccaaacatgaaggaagtttctgtggnnnnnnnnnnnnnnnnnng |
213 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
1331895 |
actcctgaagttgactgtattcttcccagtccccacttccctcttggttgcttacaccaaacatgaaggaagtttctgtggaaaaaccaaaaacaaaaag |
1331796 |
T |
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| Q |
214 |
gaaatttaacagataacttcaaataaatatattcaaaagagttttaaactttagagtttgatagatatacaatgatatagcataaataatttttacaatg |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1331795 |
gaaatttaacagataacttcaaataaatatattcaaaagagttttaaactttagagtttgatagatatacaatgatatagcataaataatttttacaatg |
1331696 |
T |
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| Q |
314 |
agaaaaacatgagaaaacatgacttgatcctagaggattcggcctttaggaaacaagatttgaccctctctgtg |
387 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
1331695 |
agaaaaacatgagaaaacatgacttgatcctagaggattccgcctttaggaaacaagatttgaccctctctgtg |
1331622 |
T |
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Target: chr2 (Bit Score: 130; Significance: 3e-67; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 17 - 181
Target Start/End: Complemental strand, 33970496 - 33970334
Alignment:
| Q |
17 |
agcatgttatcttgcatactcaacaatgaatactatcttataaagacacaaaatttaaaagtttacatttccatttgagagtgaaactgatgcttgtact |
116 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||| || |
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| T |
33970496 |
agcatgttatcttgcatactcaacaatgaagactatcttataaagaca--aaatttagaagtttacatttccatttgagagtgaaactgatgcttgttct |
33970399 |
T |
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| Q |
117 |
cctgaagttgactgtattcttcccagtccccacttccctcttggttgcttacaccaaacatgaag |
181 |
Q |
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|| |||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
33970398 |
ccagaagttgattgtattcttcccagtccccacttccctcttggttgcctacaccaaacatgaag |
33970334 |
T |
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