View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1798_high_14 (Length: 349)
Name: NF1798_high_14
Description: NF1798
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1798_high_14 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 343
Target Start/End: Original strand, 33528860 - 33529213
Alignment:
| Q |
1 |
cacacatctttgttatttattgacgcgcttttgtctgaattcacaacaattatactattaacttttgatttttctcactcnnnnnnnnacaaggaaatga |
100 |
Q |
| |
|
||||||||||||||||| |||| | ||||||| |||||||||||| |||| ||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
33528860 |
cacacatctttgttattcattggtggaattttgtccgaattcacaacagttattatattaacttttgatttttctcactcttttttt-acaaggaaatga |
33528958 |
T |
|
| Q |
101 |
agtatatcagtagactagggaagaaaatgagcggtattagatccccactacatcaaaatgtagaagagaatcaaagtgaaggggaaaagaataaaaatag |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33528959 |
agtatatcagtagactagggaagaaaatgagcggtattagatccccactacatcaaaatgtagaagagaatcaaagtgaaggggaaaagaataaaaatag |
33529058 |
T |
|
| Q |
201 |
tgcaggaaaagttgcatgagtgaccaattgctaatgatggtaatcaagacctgagagtttgtttctacaatgagtgacttaatattgagaggattggcaa |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33529059 |
tgcaggaaaagttgcatgagtgaccaattgctaatgatggtaatcaagacctgagagtttgtttctacaatgagtgacttaatattgagaggattggcaa |
33529158 |
T |
|
| Q |
301 |
cccgtaagcc------------ttagaattcagctgaaacaatgagaataatcta |
343 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||| ||||| |
|
|
| T |
33529159 |
cccgtaagccatgaatcataccttagaattcagctgaaacaatgagaattatcta |
33529213 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 2647966 - 2648014
Alignment:
| Q |
1 |
cacacatctttgttatttattgacgcgcttttgtctgaattcacaacaa |
49 |
Q |
| |
|
||||||||||||||||| |||| | | ||||||||||||||||||||| |
|
|
| T |
2647966 |
cacacatctttgttattcattggtgtgattttgtctgaattcacaacaa |
2648014 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University