View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1798_high_28 (Length: 273)
Name: NF1798_high_28
Description: NF1798
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1798_high_28 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 126; Significance: 5e-65; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 128 - 257
Target Start/End: Original strand, 36026076 - 36026205
Alignment:
| Q |
128 |
tgggttgttgtaaaaattggaactttcttctgcatttctcatcccaagttgcaaaacctgaaaatggtcattgtaaaaaacatttaaagttagaatcttt |
227 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
36026076 |
tgggttgttgtaaaaattggaactttcttctgcatttctcatcccaagttgcaaaacctgaaaagggtcattgtaaaaaacatttaaagttagaatcttt |
36026175 |
T |
|
| Q |
228 |
gtcttcattagaacaatgaatagaagtata |
257 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
36026176 |
gtcttcattagaacaatgaatagaagtata |
36026205 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 36025949 - 36026013
Alignment:
| Q |
1 |
aatttgattgtgttacaacaactccatcccattgctcttcacacaaaactggcttcacaggaagt |
65 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36025949 |
aatttgattgtgttacaacaactccatcccattgctcttcacacaaaactggcttcacaggaagt |
36026013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University