View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1798_high_38 (Length: 248)
Name: NF1798_high_38
Description: NF1798
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1798_high_38 |
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Alignment Details
Target: chr3 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 12 - 228
Target Start/End: Original strand, 40305450 - 40305666
Alignment:
| Q |
12 |
atgaattgggtccatcgaatcaaacagtaataatgatcgaattgagggggaaagcttaattacctgagaatccaaagcgaaatgtaaggaagaagaagcg |
111 |
Q |
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| T |
40305450 |
atgaattgggtacatctaatcaaacagtaataatgattgaattgagggggaaagcttaattacctgagaatccaaagcgaaatgtaaggaagaagaagcg |
40305549 |
T |
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| Q |
112 |
gcggtaacgaggtgtgatgttctttggagaatgagctgagggttcttcttcaaccggagaactgtagaattgtcggagaatgccacgtggcaggcgcaga |
211 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
40305550 |
gcggtaacgaggtgtgatgttctttggagaatgagctgagggttcttcttcaaccggagaactgtagaattgtaggagaatgccacgtggcaggcgcaga |
40305649 |
T |
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| Q |
212 |
gactattacatgccaac |
228 |
Q |
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| T |
40305650 |
gactattacatgccaac |
40305666 |
T |
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