View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1798_high_4 (Length: 526)
Name: NF1798_high_4
Description: NF1798
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1798_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 486; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 486; E-Value: 0
Query Start/End: Original strand, 18 - 519
Target Start/End: Original strand, 54430654 - 54431155
Alignment:
| Q |
18 |
gtgagttcatgattttcgcagcagtaagcagtttggtgagtatatatgcaagttggtctgttatgcatacatgtgaattcattttggattcctccattta |
117 |
Q |
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| T |
54430654 |
gtgagttcatgattttcgcagcagtaagcagtttggtgagtatatatgcaagttggtctgttatgcatacatatgaattcattttggattcctccattta |
54430753 |
T |
|
| Q |
118 |
cccaccattcatttagagttatactcctataaggaatatatttgtcttttaatcgtttttataaatttctctctacttatttttctattcatccaaacaa |
217 |
Q |
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| T |
54430754 |
ctcaccattcatttagagttatactcctataaggaatatatttgtcttttaatcgtttttataaatttctctctacttatttttctattcatccaaacaa |
54430853 |
T |
|
| Q |
218 |
tacaaactaatggaattcactttaattagcacttctcactaatggagttcatcaatcttctaattgtgtctatctctctcataaatgaacaataatctag |
317 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
54430854 |
tacaaactaaaggaattcactttaattagcacttctcactaatggagttcatcaatcttctaattgtgtctatctctctcataaatgaacaatagtctag |
54430953 |
T |
|
| Q |
318 |
atgtggggtaaatgaatggaatctcaactcaagaaacacacaattgattatcttgaacttgttactaaacaaatgttaatccactagtccatatttgctc |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54430954 |
atgtggggtaaatgaatggaatctcaactcaagaaacacacaattgattatcttgaacttgttactaaacaaatgttaatccactagtccatatttgctc |
54431053 |
T |
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| Q |
418 |
catttagtcctgttcacttcatatatgcaaaacattgaggacaatccatatacacttcttctcaaaaaatggaggacaatccatatacacttattcttct |
517 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54431054 |
catttagtcctgttcacttcatatatgcaaaacattgaggacaatccatatacacttcttctcaaaaaatggaggacaatccatatacacttattcttct |
54431153 |
T |
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| Q |
518 |
ca |
519 |
Q |
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| T |
54431154 |
ca |
54431155 |
T |
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