View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1798_high_54 (Length: 209)
Name: NF1798_high_54
Description: NF1798
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1798_high_54 |
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Alignment Details
Target: chr8 (Bit Score: 156; Significance: 5e-83; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 16 - 179
Target Start/End: Original strand, 17004234 - 17004397
Alignment:
| Q |
16 |
aaaattggagacaaagtggtgatgtgtcatagattaaatttcaaaaatgttgtattttattgtcaccaagtaaatgcaactacaacttacatggttccat |
115 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||| |
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| T |
17004234 |
aaaattggagacaaagtggtgatgtgtcatagattaaatttcaaaaatgttgtattttattgtcaccaagttaatgcaactacaacttacatggtgccat |
17004333 |
T |
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| Q |
116 |
tggtggctttagatggaaccaaagctaaggcactaactgtctgccaccatgatacaagaggtgt |
179 |
Q |
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| T |
17004334 |
tggtggctttagatggaaccaaagctaaggcactaactgtctgccaccatgatacaagaggtgt |
17004397 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 89; E-Value: 4e-43
Query Start/End: Original strand, 12 - 192
Target Start/End: Original strand, 17107412 - 17107592
Alignment:
| Q |
12 |
gaagaaaattggagacaaagtggtgatgtgtcatagattaaatttcaaaaatgttgtattttattgtcaccaagtaaatgcaactacaacttacatggtt |
111 |
Q |
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| T |
17107412 |
gaagaaaattggagacaaagcagtgatgtgtcatagattgaatttcaaagacatggtattttattgccaccaagttaatgcaacaacagtttacatggtg |
17107511 |
T |
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| Q |
112 |
ccattggtggctttagatggaaccaaagctaaggcactaactgtctgccaccatgatacaagaggtgtggatcctgatgtt |
192 |
Q |
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| T |
17107512 |
ctattggtggcttctgatggaactaaagctaaggcactaactatttgtcaccatgatacaagaggaatgaatcctgatgtt |
17107592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 12 - 189
Target Start/End: Complemental strand, 17117418 - 17117241
Alignment:
| Q |
12 |
gaagaaaattggagacaaagtggtgatgtgtcatagattaaatttcaaaaatgttgtattttattgtcaccaagtaaatgcaactacaacttacatggtt |
111 |
Q |
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| T |
17117418 |
gaagaaaattggagacaacgcggtgttgtgtcatcgaatgaatttcaaaaatattatattttcttgtcaccaagttaatgcaacaacagtttacatggtg |
17117319 |
T |
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| Q |
112 |
ccattggtggctttagatggaaccaaagctaaggcactaactgtctgccaccatgatacaagaggtgtggatcctgat |
189 |
Q |
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| T |
17117318 |
ccattggtggcttctgatggaactaaagctaaggcagtgactatttgtcaccatgatacaagaggtatgaatcctgat |
17117241 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 16 - 191
Target Start/End: Complemental strand, 17956500 - 17956325
Alignment:
| Q |
16 |
aaaattggagacaaagtggtgatgtgtcatagattaaatttcaaaaatgttgtattttattgtcaccaagtaaatgcaactacaacttacatggttccat |
115 |
Q |
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| T |
17956500 |
aaaataggagacaacgcagtgatgtgccatagattgaattttaaaaaagttctattctattgccaccaagtcaatgcgacaacaacttacatggttccat |
17956401 |
T |
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| Q |
116 |
tggtggctttagatggaaccaaagctaaggcactaactgtctgccaccatgatacaagaggtgtggatcctgatgt |
191 |
Q |
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| T |
17956400 |
tggtggcatccgatggaaccaaatctaaggcactaacaatctgtcaccatgatactcgaggtatggatcctaatgt |
17956325 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 12 - 191
Target Start/End: Complemental strand, 17986666 - 17986487
Alignment:
| Q |
12 |
gaagaaaattggagacaaagtggtgatgtgtcatagattaaatttcaaaaatgttgtattttattgtcaccaagtaaatgcaactacaacttacatggtt |
111 |
Q |
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|||||||||||||||||||| ||||||||||||| | |||||||| | | |||||||||||||| |||||||| |||||||| |||| ||||| ||| |
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| T |
17986666 |
gaagaaaattggagacaaagccgtgatgtgtcataaactaaatttcgatcaagttgtattttattgccaccaagtcaatgcaacatcaacatacatagtt |
17986567 |
T |
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| Q |
112 |
ccattggtggctttagatggaaccaaagctaaggcactaactgtctgccaccatgatacaagaggtgtggatcctgatgt |
191 |
Q |
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| T |
17986566 |
cctttagtggcctctgatggaactaaagcgaaggcactaacaatatgccaccatgacacgagaggtatggatcctgatgt |
17986487 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 16 - 186
Target Start/End: Complemental strand, 17945502 - 17945332
Alignment:
| Q |
16 |
aaaattggagacaaagtggtgatgtgtcatagattaaatttcaaaaatgttgtattttattgtcaccaagtaaatgcaactacaacttacatggttccat |
115 |
Q |
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||||| |||||||| | ||||||||||||||| | ||| | ||||| |||| ||| ||||| ||||| | || || || || |||||||||||||||| |
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| T |
17945502 |
aaaataggagacaacgcagtgatgtgtcatagaatgaatcttaaaaaggttggattctattgccaccagatcaacgcgacaacgacttacatggttccat |
17945403 |
T |
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| Q |
116 |
tggtggctttagatggaaccaaagctaaggcactaactgtctgccaccatgatacaagaggtgtggatcct |
186 |
Q |
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| T |
17945402 |
tggtggcctctgatggaactaaatccaaggcactaactatctgccaccatgatacaagaggtatggatcct |
17945332 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 15 - 110
Target Start/End: Complemental strand, 17999450 - 17999355
Alignment:
| Q |
15 |
gaaaattggagacaaagtggtgatgtgtcatagattaaatttcaaaaatgttgtattttattgtcaccaagtaaatgcaactacaacttacatggt |
110 |
Q |
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|||||||| |||||||| || ||||||||| || | |||||| | || ||||||||||||||||||||||| |||||| | |||||||||||||| |
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| T |
17999450 |
gaaaattgcagacaaaggagtaatgtgtcatcgaatgaatttcgagaaagttgtattttattgtcaccaagtgaatgcatcaacaacttacatggt |
17999355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 123
Target Start/End: Original strand, 34241423 - 34241526
Alignment:
| Q |
20 |
ttggagacaaagtggtgatgtgtcatagatt-aaatttcaaaaatgttgtattttattgtcaccaagtaaatgcaactacaacttacatggttccattgg |
118 |
Q |
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|||||||||||| |||||||||||||| || || ||||||||| ||||||||||||||||| |||| ||| ||| ||| ||| | ||||||||||| |
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| T |
34241423 |
ttggagacaaagcagtgatgtgtcataggttgaactttcaaaaa-gttgtattttattgtcatgaagttcatggaacaacagcttttaaggttccattgg |
34241521 |
T |
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| Q |
119 |
tggct |
123 |
Q |
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||||| |
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| T |
34241522 |
tggct |
34241526 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 80
Target Start/End: Original strand, 34315590 - 34315650
Alignment:
| Q |
20 |
ttggagacaaagtggtgatgtgtcatagattaaatttcaaaaatgttgtattttattgtca |
80 |
Q |
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||||||| |||| |||||||||||| || || |||||| |||| ||||||| ||||||||| |
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| T |
34315590 |
ttggagataaaggggtgatgtgtcacaggttgaatttccaaaaggttgtatattattgtca |
34315650 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 176
Target Start/End: Complemental strand, 17258256 - 17258100
Alignment:
| Q |
20 |
ttggagacaaagtggtgatgtgtcatagattaaatttcaaaaatgttgtattttattgtcaccaagtaaatgcaactacaacttacatggttccattggt |
119 |
Q |
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|||||||||| | ||||||||||||||||| |||||| |||| |||||||| |||| |||||||| | ||||| || |||| |||| ||||||| |
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| T |
17258256 |
ttggagacaatgcagtgatgtgtcatagattgaatttcgaaaaagttgtattcaattgccaccaagtgcaagcaacaactgcttatgtggtatcattggt |
17258157 |
T |
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| Q |
120 |
ggctttagatggaaccaaagctaaggcactaactgtctgccaccatgatacaagagg |
176 |
Q |
| |
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|| |||||| ||||||||||| ||||||| ||||||||||| |||||||| |
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| T |
17258156 |
agcccccgatggaggtaaagctaaggccttaactgtttgccaccatgacacaagagg |
17258100 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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