View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1798_high_8 (Length: 430)
Name: NF1798_high_8
Description: NF1798
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1798_high_8 |
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| [»] scaffold0037 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 283; Significance: 1e-158; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 27 - 358
Target Start/End: Original strand, 360453 - 360788
Alignment:
| Q |
27 |
ataataaaatatattttttcaaaaaatatagaacctgatattcctttgaaagagaattgcttcagggtgggagaattgcttcgagagagtatgtcttgta |
126 |
Q |
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| T |
360453 |
ataataaaatatattttttcaaaaaatatagaacctgatattcctttgaaagagaatttcttcagggtgggagaattgcttcgagagagtatgtcttgta |
360552 |
T |
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| Q |
127 |
gccaaagcaggacatatacctccaagagtttattcaagagcaagactaatacctccaagagtgtttcactacctcattcagaatcttcataatggccctg |
226 |
Q |
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| T |
360553 |
gcaagagcaagacatatacctccaagagtttattcaagagcaagactaatacctccaagagtgtttcactacctcattcagaatcttcagaacggccttg |
360652 |
T |
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| Q |
227 |
tagcaaactttgttaacgagcaacactataacttgcaaactttgttgtgaggctcgcgctgatat----tcgcctcatctgtcttggtcttcagcttctt |
322 |
Q |
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| T |
360653 |
tagcaaactttgttaacgagcaacaccataacttgcaaactttgttgtgaggctcgcgctgatattcgatcgcctcatctgtcttggtcttcagcttcct |
360752 |
T |
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| Q |
323 |
gattttgaggcgatgtatgcacttcccaacatagaa |
358 |
Q |
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| T |
360753 |
gattttgaggcgatgtatgcacttcccaacatagaa |
360788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 364 - 416
Target Start/End: Original strand, 360827 - 360879
Alignment:
| Q |
364 |
cacaaaagaatagttaacgataatatagaaataagctttaatgatgaagtata |
416 |
Q |
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| T |
360827 |
cacaaaagaatagttaacgataatatagaaataagctttaatgatgaagtata |
360879 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 37 - 115
Target Start/End: Complemental strand, 11203962 - 11203884
Alignment:
| Q |
37 |
atattttttcaaaaaatatagaacctgatattcctttgaaagagaattgcttcagggtgggagaattgcttcgagagag |
115 |
Q |
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| T |
11203962 |
atattttctcaaaatatatagaacctgatattccttcgaaaaagagttgcttcaagatgggggaatcacttcgagagag |
11203884 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 156 - 213
Target Start/End: Complemental strand, 14065794 - 14065737
Alignment:
| Q |
156 |
ttattcaagagcaagactaatacctccaagagtgtttcactacctcattcagaatctt |
213 |
Q |
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| T |
14065794 |
ttattcaagagcaggattaatacctccaagagtgtttcactatctcattgaaaatctt |
14065737 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 153 - 213
Target Start/End: Complemental strand, 23880192 - 23880132
Alignment:
| Q |
153 |
agtttattcaagagcaagactaatacctccaagagtgtttcactacctcattcagaatctt |
213 |
Q |
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| T |
23880192 |
agtttattcaagagcaggattaatacctccaagagtgtatcactatctcattgaaaatctt |
23880132 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 48 - 90
Target Start/End: Complemental strand, 24115668 - 24115626
Alignment:
| Q |
48 |
aaaaatatagaacctgatattcctttgaaagagaattgcttca |
90 |
Q |
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| T |
24115668 |
aaaaatatagaacctgatattcctttgaaaaagaatagcttca |
24115626 |
T |
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Target: scaffold0037 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0037
Description:
Target: scaffold0037; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 153 - 203
Target Start/End: Original strand, 19340 - 19390
Alignment:
| Q |
153 |
agtttattcaagagcaagactaatacctccaagagtgtttcactacctcat |
203 |
Q |
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| T |
19340 |
agtttattcaagagctggattaatacctccaagagtgtatcactatctcat |
19390 |
T |
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