View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1798_low_11 (Length: 431)
Name: NF1798_low_11
Description: NF1798
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1798_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 398; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 16 - 425
Target Start/End: Complemental strand, 16853917 - 16853508
Alignment:
| Q |
16 |
ttctcaacatcactggcttcacgcgcgatgaagttcttggtagaagtggttccatgtttcaaggttcagcgacatgtcgtaggtcggtgatggaaattcg |
115 |
Q |
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| T |
16853917 |
ttctcaacatcactggcttcacgcgcgacgaagttcttggtagaagtggttccatgtttcaaggttcagcgacatgtcgtaggtcggtgatggaaattcg |
16853818 |
T |
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| Q |
116 |
tgaagctgttagggaagaaagagaaacgaacgttgttttggttaattatagaaaaaacggcacgccgttttgggttttcttaactgtttctcctgttttt |
215 |
Q |
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| T |
16853817 |
tgaagctgttagggaagaaagagaaacgaacgttgttttggttaattatagaaaaaacggcacgccgttttgggttttcttaactgtttctcctgttttt |
16853718 |
T |
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| Q |
216 |
tgtgttaaaagtggtgctgttgttcattttgttgctgttcaagttccgttaaaattaagggtttatggtggtggtggttctgttgtggtgaatcatgatt |
315 |
Q |
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| T |
16853717 |
tgtgtcaaaagtggtgctgttgttcattttgttgctgttcaagttccgttgaaattaagggtttatggtggtggtggttctgttgtggtgaatcatgatt |
16853618 |
T |
|
| Q |
316 |
ttatgtttcggtgttgtcggaaagaggtttgttcggatagtttggttgaacttgatcgtgtttcttccaggaatcaagtgttggatttggaacatgatga |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16853617 |
ttatgtttcggtgttgtcggaaagaggtttgttcggatagtttggttgaacttgatcgtgtttcttccaggaatcaagtgttggatttggaacatgatga |
16853518 |
T |
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| Q |
416 |
tgatgatgtc |
425 |
Q |
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| T |
16853517 |
tgatgatgtc |
16853508 |
T |
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