View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1798_low_14 (Length: 410)
Name: NF1798_low_14
Description: NF1798
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1798_low_14 |
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Alignment Details
Target: chr1 (Bit Score: 378; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 13 - 394
Target Start/End: Complemental strand, 39165813 - 39165432
Alignment:
| Q |
13 |
gaagctgaaattgaagacatgtgcaagactcattatgaagaattcatccttgcagtcgatgaacttcgcggtgtattggttgatgccgaagagctcaaga |
112 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39165813 |
gaagctgaaattgaagacatgtgcaagactcactatgaagaattcatccttgcagtcgatgaacttcgcggtgtattggttgatgccgaagagctcaaga |
39165714 |
T |
|
| Q |
113 |
gtgaactccagagtgataatttcaagctgcagcaagttggcactacccttcttgtcaaacttgaagagcttcttgaatcctattctgtcaagaagaatgt |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39165713 |
gtgaactccagagtgataatttcaagctgcagcaagttggcactacccttcttgtcaaacttgaagagcttcttgaatcctattctgtcaagaagaatgt |
39165614 |
T |
|
| Q |
213 |
cactgaagctataaagaactcaatgaactgtattcaggtgttagagctttgtgtaaagtgcaataatcatatttctgaaggacagttttatcctgcattg |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39165613 |
cactgaagctataaagaactcaatgaactgtattcaggtgttagagctttgtgtaaagtgcaataatcatatttctgaaggacagttttatcctgcattg |
39165514 |
T |
|
| Q |
313 |
aaaaccgttgatttgcttgagaagagttatatgcagaatattcctgctagagctcttaaattggtggttgagaagagagttc |
394 |
Q |
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| T |
39165513 |
aaaaccgttgatttgcttgagaagagttatatgcagaatattcctgctagagctcttaaattggtggttgagaagagagttc |
39165432 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 13 - 341
Target Start/End: Original strand, 19509506 - 19509834
Alignment:
| Q |
13 |
gaagctgaaattgaagacatgtgcaagactcattatgaagaattcatccttgcagtcgatgaacttcgcggtgtattggttgatgccgaagagctcaaga |
112 |
Q |
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|||||||||||||| || ||||||||||||||||| || || ||||||||||||||||||||||||||||| || ||| |||| || |||||| | |||| |
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| T |
19509506 |
gaagctgaaattgaggagatgtgcaagactcattacgaggagttcatccttgcagtcgatgaacttcgcggggtgttgtttgacgctgaagagttaaaga |
19509605 |
T |
|
| Q |
113 |
gtgaactccagagtgataatttcaagctgcagcaagttggcactacccttcttgtcaaacttgaagagcttcttgaatcctattctgtcaagaagaatgt |
212 |
Q |
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|| | ||||| |||| ||||| ||| | ||||| ||||||| | |||||||||||| ||||||||||||||||| | |||||||| ||||||||||| |
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| T |
19509606 |
gtcagctccatggtgacaattttaagttacagcaggttggcagtgaccttcttgtcaagcttgaagagcttcttgagtgttattctgttaagaagaatgt |
19509705 |
T |
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| Q |
213 |
cactgaagctataaagaactcaatgaactgtattcaggtgttagagctttgtgtaaagtgcaataatcatatttctgaaggacagttttatcctgcattg |
312 |
Q |
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|||||||| |||| | || | ||| ||| || |||||||||||||||| | |||||| || | ||| |||||||||| ||||||||| | |||||| |
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| T |
19509706 |
ggctgaagctgtaaaaatatccaagaattgtgttgaggtgttagagctttgcggaaagtgtaacagtcaagtttctgaaggccagttttattcagcattg |
19509805 |
T |
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| Q |
313 |
aaaaccgttgatttgcttgagaagagtta |
341 |
Q |
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||||| ||||||||||||||||| ||||| |
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| T |
19509806 |
aaaactgttgatttgcttgagaaaagtta |
19509834 |
T |
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