View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1798_low_15 (Length: 409)
Name: NF1798_low_15
Description: NF1798
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1798_low_15 |
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Alignment Details
Target: chr8 (Bit Score: 76; Significance: 5e-35; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 33196934 - 33197009
Alignment:
| Q |
1 |
ttcttcaagcttcccttccctatggttttctctaacacgtcattttcagtccttccatggatccttaatggttaag |
76 |
Q |
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| T |
33196934 |
ttcttcaagcttcccttccctatggttttctctaacacgtcattttcagtccttccatggatccttaatggttaag |
33197009 |
T |
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Target: chr8; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 143 - 255
Target Start/End: Original strand, 33197076 - 33197188
Alignment:
| Q |
143 |
cattcaattcgtgcatgcatgtgtgttcttacaactcatttaattaacaaaactataatataaataaatcnnnnnnnnnnnaatttgaggcaaaatataa |
242 |
Q |
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| T |
33197076 |
cattcaattcgtgcatgcatctgtgtttttacaactcatttaattaacaaaactataatataaataaatctttttttttttaatttgaggcaaaatataa |
33197175 |
T |
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| Q |
243 |
cataaatcttgat |
255 |
Q |
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| T |
33197176 |
cataaatcttgat |
33197188 |
T |
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