View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1798_low_17 (Length: 397)
Name: NF1798_low_17
Description: NF1798
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1798_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 367; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 1 - 387
Target Start/End: Complemental strand, 54639041 - 54638655
Alignment:
| Q |
1 |
taaatcaaatttgtgcacaacaattttgatacttcactcatctaaaaaagtttccgtcgcctacgagctgaaaaatgacacaatttactcctttaggatt |
100 |
Q |
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| T |
54639041 |
taaatcaaatttgtgcacaacaattttgatacttcactcatctaaaaaagtttccgtcgcctacgagctgaaaaatgacacaacttactcctttaggatt |
54638942 |
T |
|
| Q |
101 |
atatggtgctggaatagaaggatagccaggcttataatattattagttcctagttcctactaattacttttctagccttttcctatcaaattcagatatt |
200 |
Q |
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| T |
54638941 |
atatggtgctggaatagaaggatagccagatttataatattatcagttcctagttcctactaattacttttctagccttttcctatcaaattcagatatt |
54638842 |
T |
|
| Q |
201 |
aacaactagattatgtaaatatccaaaaacattccctatgcaactacgaactgaagaagctaaattaccagttgcactttctcagatttaggcttcactg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54638841 |
aacaactagattatgtaaatatccaaaaacattccctatgcaactacgaactgaagaagctaaattaccagttgcactttctcagatttaggcttcactg |
54638742 |
T |
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| Q |
301 |
agctttggacatttgacttcttggcagggcctgaactaggggctgctgccgagaagagactctcgagctccgacatatcaatctctg |
387 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
54638741 |
agctttggacatttgacttcttggcagggcctgaactaggggctgctgccgagaagagactctcgagctctgacatatcaatctctg |
54638655 |
T |
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