View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1798_low_18 (Length: 396)
Name: NF1798_low_18
Description: NF1798
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1798_low_18 |
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Alignment Details
Target: chr3 (Bit Score: 317; Significance: 1e-179; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 5 - 380
Target Start/End: Complemental strand, 39527679 - 39527283
Alignment:
| Q |
5 |
agtgagaagaatgttacaacgataagtggtttacacaagataagataggaacaaaaatacatttcttggaagatagcacgtgtggagaagaattaaaagc |
104 |
Q |
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| T |
39527679 |
agtgataagaatgttacaacgataagtggtttacacaagataagataggaacaaaaatacatttcttggaagatagcacgtgtggagaagaattaaaagc |
39527580 |
T |
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| Q |
105 |
actggctgactaaatggagtatagtccaacatatgggcaagttaagaaaaattataggccaaactaacgagagatttagagataaacaaacctatcttaa |
204 |
Q |
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| T |
39527579 |
actggctgactaaatggagtatagtccaacataagggcaagttaagaaaaattataggccaaactaacgagagatttagagataaacaaacctatcttaa |
39527480 |
T |
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| Q |
205 |
cacttgatccatgacagaaatttatctaggtcttccccagctagtggaagcctgttttgctgtta---------------------ttacacttaactgt |
283 |
Q |
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| T |
39527479 |
cacttgatccatgacagaaatttatctaggtcttccccagctagtggaagcctgttttgctgttatttctgttgtgtaaaattgttttacacttaactgt |
39527380 |
T |
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| Q |
284 |
tattatttgagattaattattatgcattctttaagattgatatttgtcttactgttatgataagtatttatcagagaagcactgaatgattgaaaaa |
380 |
Q |
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| T |
39527379 |
tattatttgagattaattattatgcattctttaagattgatgtttgtcttactgttatgataagtatttatcagagaagcactgaatgattgaaaaa |
39527283 |
T |
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