View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1798_low_19 (Length: 381)
Name: NF1798_low_19
Description: NF1798
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1798_low_19 |
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Alignment Details
Target: chr6 (Bit Score: 315; Significance: 1e-177; HSPs: 12)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 12 - 378
Target Start/End: Original strand, 5174244 - 5174597
Alignment:
| Q |
12 |
atagggcagatagtgttgccggtgttctatgatgttgatccttcagatgtacgacaccaaacaggtgagtttggaaaagcgttccaaagtctcttgagca |
111 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5174244 |
atagggcagatagtgttgccggtgttctatgatgttgatccttcggatgtacgacaccaaacaggtgagtttggaaaagcgttccaaagtctcttgagca |
5174343 |
T |
|
| Q |
112 |
gaatttcaaagaagaaaagcacgtccctgaaatggagagatgcacttcgtgaggctgctgagcttgctggctttgtagttccaaatttcaggtaatttaa |
211 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
5174344 |
gaatttcaaagaagaaaagcacgtccctgaaatggagagatgcacttcgtgaggctgctgagcttgctggcttt-------------tcaggtaatttaa |
5174430 |
T |
|
| Q |
212 |
ttcaaccgttacaatacttctatattggagatgttataccaattgtcttgggtaacaggtttttatcaatgctggaaatgattggaattacactttttaa |
311 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5174431 |
ttcaactgttacaatacttctatattggagatgttataccaattgtcttgggtaacaggtttttatcaatgctggaaatgattggaattacactttttaa |
5174530 |
T |
|
| Q |
312 |
tttgtatgttcaatttttctttggtaggaatgaaagtgaagcgattaagaatattgttgacaaagtt |
378 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5174531 |
tttgtatgttcaatttttctttggtaggaatgaaagtgaagcgattaagaatattgttgacaaagtt |
5174597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 83 - 378
Target Start/End: Original strand, 5276130 - 5276436
Alignment:
| Q |
83 |
tggaaaagcgttccaaagtctcttgagcagaatttcaaagaagaaaagcacgtccctgaaatggagagatgcacttcgtgaggctgctgagcttgctggc |
182 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||| ||||||| |||||||| |
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| T |
5276130 |
tggaaaagcgttccaaagtctcttgagcagaattttaaagaagaaaagcacatccctgaaatggagagatgcacttcgtgaggttgctgagattgctggc |
5276229 |
T |
|
| Q |
183 |
tttgtagttccaaatttcaggtaatttaattcaaccgttacaatacttctatattggagatgttataccaattgtcttgggtaacaggtttttatcaatg |
282 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5276230 |
tttgtagttccaaatttcaggtaatttaattcaaccgttacaatacttctatattggagatgttataccaattgtcttgggtaacaggtttttatcaatg |
5276329 |
T |
|
| Q |
283 |
ctggaaatgattggaattacactttttaatttgtatgttcaatttttctttg-----------gtaggaatgaaagtgaagcgattaagaatattgttga |
371 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
5276330 |
ctggaaatgattggaattacactttttaatttgtatgtttaatttttctttggtacactttttgtaggaatgaaagtgaagcgattaagaatattgttga |
5276429 |
T |
|
| Q |
372 |
caaagtt |
378 |
Q |
| |
|
||||||| |
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|
| T |
5276430 |
caaagtt |
5276436 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 12 - 217
Target Start/End: Complemental strand, 5692926 - 5692721
Alignment:
| Q |
12 |
atagggcagatagtgttgccggtgttctatgatgttgatccttcagatgtacgacaccaaacaggtgagtttggaaaagcgttccaaagtctcttgagca |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5692926 |
atagggcagatagtgttgccggtgttctatgatgttgatccttcagatgtacgacaccaaacaggtgagtttggaaaagcgttccaaagtctcttgagca |
5692827 |
T |
|
| Q |
112 |
gaatttcaaagaagaaaagcacgtccctgaaatggagagatgcacttcgtgaggctgctgagcttgctggctttgtagttccaaatttcaggtaatttaa |
211 |
Q |
| |
|
||||||||||||||| | || ||| |||||||||||||| || ||| |||||| ||||| ||||||||||||||||||||||||||||||||| ||| | |
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| T |
5692826 |
gaatttcaaagaagacagacaagtcgctgaaatggagagacgcgcttagtgaggttgctgggcttgctggctttgtagttccaaatttcaggtagtttca |
5692727 |
T |
|
| Q |
212 |
ttcaac |
217 |
Q |
| |
|
|||||| |
|
|
| T |
5692726 |
ttcaac |
5692721 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 12 - 153
Target Start/End: Original strand, 5275990 - 5276131
Alignment:
| Q |
12 |
atagggcagatagtgttgccggtgttctatgatgttgatccttcagatgtacgacaccaaacaggtgagtttggaaaagcgttccaaagtctcttgagca |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5275990 |
atagggcagatagtgttgccggtgttctatgatgttgatccttcagatgtacgacaccaaacaggtgagtttggaaaagcgttccaaagtctcttgagca |
5276089 |
T |
|
| Q |
112 |
gaatttcaaagaagaaaagcacgtccctgaaatggagagatg |
153 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||| |
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| T |
5276090 |
gaatttcaaagaagaaaagcacgtccctgaaattgagagatg |
5276131 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 18 - 209
Target Start/End: Original strand, 5380473 - 5380667
Alignment:
| Q |
18 |
cagatagtgttgccggtgttctatgatgttgatccttcagatgtacgacaccaaacaggtgagtttggaaaagcgttccaaagtctcttgagcagaattt |
117 |
Q |
| |
|
||||||||| | ||||||||||||||||||||||| | || ||||| |||||||| |||||||||||| |||| || ||||||||||||||| | ||| |
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|
| T |
5380473 |
cagatagtgctaccggtgttctatgatgttgatcccttggaggtacgtcaccaaactggtgagtttggacaagcttttgaaagtctcttgagcaaacttt |
5380572 |
T |
|
| Q |
118 |
caaagaaga--aaag-cacgtccctgaaatggagagatgcacttcgtgaggctgctgagcttgctggctttgtagttccaaatttcaggtaattt |
209 |
Q |
| |
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| ||||||| |||| | | | |||||||||||||| || |||| || |||||||| ||||||| |||||||||| ||| | |||||||||| |
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| T |
5380573 |
cgaagaagaagaaagataagacgctgaaatggagagaggctcttcatggggctgctgcctttgctggatttgtagttctaaactccaggtaattt |
5380667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 9 - 88
Target Start/End: Complemental strand, 5107786 - 5107707
Alignment:
| Q |
9 |
agcatagggcagatagtgttgccggtgttctatgatgttgatccttcagatgtacgacaccaaacaggtgagtttggaaa |
88 |
Q |
| |
|
|||||||||||| | ||| | ||||||||||||||||||||||| ||||| ||||| || ||||| |||||||||||||| |
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| T |
5107786 |
agcatagggcaggtggtgcttccggtgttctatgatgttgatccctcagaagtacgtcatcaaactggtgagtttggaaa |
5107707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 139 - 208
Target Start/End: Original strand, 5429836 - 5429905
Alignment:
| Q |
139 |
tgaaatggagagatgcacttcgtgaggctgctgagcttgctggctttgtagttccaaatttcaggtaatt |
208 |
Q |
| |
|
||||||||||||| |||||||||||||| ||||| |||||||| ||||||||| ||||| ||||||||| |
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| T |
5429836 |
tgaaatggagagacgcacttcgtgaggcagctgaccttgctggatttgtagttttaaattccaggtaatt |
5429905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 14 - 122
Target Start/End: Complemental strand, 5149703 - 5149595
Alignment:
| Q |
14 |
agggcagatagtgttgccggtgttctatgatgttgatccttcagatgtacgacaccaaacaggtgagtttggaaaagcgttccaaagtctcttgagcaga |
113 |
Q |
| |
|
||||||| | || ||||| ||||| |||||||| ||||| | || ||||| ||||||||| |||||||||| ||||| || ||||||||||||| ||| |
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| T |
5149703 |
agggcagttggttttgccagtgttttatgatgtagatccatgtgaagtacgtcaccaaacaagtgagtttggcaaagcatttcaaagtctcttgaataga |
5149604 |
T |
|
| Q |
114 |
atttcaaag |
122 |
Q |
| |
|
||||||||| |
|
|
| T |
5149603 |
atttcaaag |
5149595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 11 - 122
Target Start/End: Original strand, 5093035 - 5093146
Alignment:
| Q |
11 |
catagggcagatagtgttgccggtgttctatgatgttgatccttcagatgtacgacaccaaacaggtgagtttggaaaagcgttccaaagtctcttgagc |
110 |
Q |
| |
|
||||||||||||||| |||| |||||||| ||||| ||||| || || ||||| ||||| | ||| |||||||| ||||| || |||| |||||| | |
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|
| T |
5093035 |
catagggcagatagttgtgccagtgttctacgatgtagatccctctgaagtacgtcaccagaaaggcgagtttggtaaagcatttcaaaatctcttaaat |
5093134 |
T |
|
| Q |
111 |
agaatttcaaag |
122 |
Q |
| |
|
|||||||||||| |
|
|
| T |
5093135 |
agaatttcaaag |
5093146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 11 - 122
Target Start/End: Complemental strand, 5160502 - 5160391
Alignment:
| Q |
11 |
catagggcagatagtgttgccggtgttctatgatgttgatccttcagatgtacgacaccaaacaggtgagtttggaaaagcgttccaaagtctcttgagc |
110 |
Q |
| |
|
||||||||||||||| ||||| |||||||| ||||| ||||| || || ||||| ||||| | ||| ||||||| ||||| || |||| |||||| | |
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| T |
5160502 |
catagggcagatagttttgccagtgttctacgatgtagatccctctgaagtacgtcaccagaaaggcaagtttggtaaagcatttcaaaatctcttaaat |
5160403 |
T |
|
| Q |
111 |
agaatttcaaag |
122 |
Q |
| |
|
|||||||||||| |
|
|
| T |
5160402 |
agaatttcaaag |
5160391 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 36 - 115
Target Start/End: Original strand, 5340679 - 5340758
Alignment:
| Q |
36 |
ttctatgatgttgatccttcagatgtacgacaccaaacaggtgagtttggaaaagcgttccaaagtctcttgagcagaat |
115 |
Q |
| |
|
||||| ||||||||||| ||||| |||| || |||||||| |||||||||||||| || |||| ||| |||| |||||| |
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| T |
5340679 |
ttctacgatgttgatccctcagaaatacgtcatcaaacaggagagtttggaaaagcatttcaaaatcttttgaacagaat |
5340758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 139 - 216
Target Start/End: Complemental strand, 5076959 - 5076882
Alignment:
| Q |
139 |
tgaaatggagagatgcacttcgtgaggctgctgagcttgctggctttgtagttccaaatttcaggtaatttaattcaa |
216 |
Q |
| |
|
||||||||||||||| ||||||||| ||||||| ||| | || ||||| || | ||| ||||||||||||| ||||| |
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|
| T |
5076959 |
tgaaatggagagatgtacttcgtgaagctgctggcctttcaggatttgtggtcctaaaattcaggtaatttatttcaa |
5076882 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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