View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1798_low_2 (Length: 552)

Name: NF1798_low_2
Description: NF1798
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1798_low_2
NF1798_low_2
[»] chr8 (3 HSPs)
chr8 (18-543)||(41786669-41787195)
chr8 (410-457)||(5870396-5870443)
chr8 (410-464)||(40151580-40151634)
[»] chr3 (3 HSPs)
chr3 (413-464)||(10020172-10020223)
chr3 (410-454)||(32930742-32930787)
chr3 (402-454)||(31264811-31264862)
[»] chr4 (5 HSPs)
chr4 (397-465)||(13668830-13668898)
chr4 (397-465)||(13681687-13681755)
chr4 (394-464)||(9694389-9694458)
chr4 (420-448)||(29035962-29035990)
chr4 (420-448)||(29048097-29048125)
[»] chr7 (3 HSPs)
chr7 (402-461)||(7192763-7192822)
chr7 (414-454)||(12421723-12421763)
chr7 (412-460)||(26853810-26853858)
[»] chr2 (7 HSPs)
chr2 (394-464)||(17229213-17229283)
chr2 (413-458)||(31053450-31053495)
chr2 (427-467)||(31203167-31203207)
chr2 (397-464)||(13365883-13365950)
chr2 (390-484)||(2336649-2336743)
chr2 (435-464)||(5788863-5788892)
chr2 (384-464)||(12454016-12454096)
[»] chr6 (1 HSPs)
chr6 (413-464)||(20117199-20117250)
[»] chr5 (1 HSPs)
chr5 (418-465)||(19910580-19910627)
[»] chr1 (3 HSPs)
chr1 (375-437)||(47493820-47493882)
chr1 (419-467)||(93387-93435)
chr1 (410-454)||(1187423-1187467)
[»] scaffold0159 (1 HSPs)
scaffold0159 (435-464)||(33236-33265)
[»] scaffold0036 (1 HSPs)
scaffold0036 (420-465)||(49428-49473)


Alignment Details
Target: chr8 (Bit Score: 435; Significance: 0; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 435; E-Value: 0
Query Start/End: Original strand, 18 - 543
Target Start/End: Original strand, 41786669 - 41787195
Alignment:
Q  18 tgatatgctttagaattttcccttaatt-aatagttgagaaaagagttatttcgacaatctaaaacttgtctaatacggtannnnnnnnatacagttgtc 116  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||        |||||||||||    
T  41786669 tgatatgctttagaattttcccttaatttaatagttgagaaaagagttatttcgacaatctaaaacttgtctaatacggtattttttttatacagttgtc 41786768  T
Q  117 aatttactaacaatttgttcctctcttctttaatcaaactaacacatactttaggtgtatataaaaaattattatatgttttcgttgttcaaatatcact 216  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||    
T  41786769 aatttactaacaatttgttcctctcttctttaatcaaactaacacatactttaggtgtatataaaaaattgttatatgctttcgttgttcaaatatcact 41786868  T
Q  217 catctgaatagttatcatactttaggtgtaattagtgtttctnnnnnnnnttgtatatgtaattagtgataaataaggatttgatacaatacttaatgtc 316  Q
    ||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41786869 catctgaatagttatcatactttaggtgtaattagtgtttctaaaaaaaattgtatatgtaattagtgataaataaggatttgatacaatacttaatgtc 41786968  T
Q  317 ttcttaaataactcgttgtaattagggagtcgacaggatcatcctctattggagaaatagcaattatataagcgagttgaacactacatcttgactcaaa 416  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||    
T  41786969 ttcttaaataactcgttgtaattagggagtcgacaagatcatcctctattggagaaataacaattatataagcaagttgaacactacatcttgactcaaa 41787068  T
Q  417 atcttaagatattgagtttatgagtcatctcacttatatgttgttcaatcttcactttactaatcaatcaatatgacattactaactcatctcacgcttg 516  Q
    |  |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41787069 aatttaagacattgagtttatgagtcatctcacttatatgttgttcaatcttcactttactaatcaatcaatatgacattactaactcatctcacgcttg 41787168  T
Q  517 ccacaacacaaacttgagaatattctt 543  Q
    ||||||||||||||| |||||||||||    
T  41787169 ccacaacacaaacttcagaatattctt 41787195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 410 - 457
Target Start/End: Complemental strand, 5870443 - 5870396
Alignment:
Q  410 actcaaaatcttaagatattgagtttatgagtcatctcacttatatgt 457  Q
    ||||||||| ||||||||||||||||||| ||  ||||||||||||||    
T  5870443 actcaaaattttaagatattgagtttatgggttctctcacttatatgt 5870396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 410 - 464
Target Start/End: Original strand, 40151580 - 40151634
Alignment:
Q  410 actcaaaatcttaagatattgagtttatgagtcatctcacttatatgttgttcaa 464  Q
    ||||||||  ||||||||||||||  |||| |||| |||||||||||||||||||    
T  40151580 actcaaaacattaagatattgagtaaatgaatcatttcacttatatgttgttcaa 40151634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 9e-16; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 413 - 464
Target Start/End: Complemental strand, 10020223 - 10020172
Alignment:
Q  413 caaaatcttaagatattgagtttatgagtcatctcacttatatgttgttcaa 464  Q
    ||||||||||||||||| ||| ||||||||||||||||||||||||||||||    
T  10020223 caaaatcttaagatattaagtatatgagtcatctcacttatatgttgttcaa 10020172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 410 - 454
Target Start/End: Complemental strand, 32930787 - 32930742
Alignment:
Q  410 actcaaaatct-taagatattgagtttatgagtcatctcacttata 454  Q
    ||||||||||| ||||| ||||||||||||||||||||||||||||    
T  32930787 actcaaaatctctaagacattgagtttatgagtcatctcacttata 32930742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 402 - 454
Target Start/End: Complemental strand, 31264862 - 31264811
Alignment:
Q  402 acatcttgactcaaaatcttaagatattgagtttatgagtcatctcacttata 454  Q
    ||||||| ||| |||||||||| |||||||||||||||||||||||| |||||    
T  31264862 acatctttactaaaaatcttaa-atattgagtttatgagtcatctcatttata 31264811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 397 - 465
Target Start/End: Original strand, 13668830 - 13668898
Alignment:
Q  397 acactacatcttgactcaaaatcttaagatattgagtttatgagtcatctcacttatatgttgttcaat 465  Q
    ||||||| |||  ||||||||| ||||||  |||||| ||| |||||||||||||||||||||||||||    
T  13668830 acactacgtctaaactcaaaatattaagactttgagtatattagtcatctcacttatatgttgttcaat 13668898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 397 - 465
Target Start/End: Original strand, 13681687 - 13681755
Alignment:
Q  397 acactacatcttgactcaaaatcttaagatattgagtttatgagtcatctcacttatatgttgttcaat 465  Q
    ||||||| |||  ||||||||| ||||||  |||||| ||| |||||||||||||||||||||||||||    
T  13681687 acactacgtctaaactcaaaatattaagactttgagtatattagtcatctcacttatatgttgttcaat 13681755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 394 - 464
Target Start/End: Original strand, 9694389 - 9694458
Alignment:
Q  394 tgaacactacatcttgactcaaaatcttaagatattgagtttatgagtcatctcacttatatgttgttcaa 464  Q
    ||||||| |||| || |||||||||||||||| |||  | ||||||||||||||||||||| | |||||||    
T  9694389 tgaacaccacattttaactcaaaatcttaagacattt-gattatgagtcatctcacttataagatgttcaa 9694458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 420 - 448
Target Start/End: Complemental strand, 29035990 - 29035962
Alignment:
Q  420 ttaagatattgagtttatgagtcatctca 448  Q
    |||||||||||||||||||||||||||||    
T  29035990 ttaagatattgagtttatgagtcatctca 29035962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 420 - 448
Target Start/End: Complemental strand, 29048125 - 29048097
Alignment:
Q  420 ttaagatattgagtttatgagtcatctca 448  Q
    |||||||||||||||||||||||||||||    
T  29048125 ttaagatattgagtttatgagtcatctca 29048097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000005; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 402 - 461
Target Start/End: Complemental strand, 7192822 - 7192763
Alignment:
Q  402 acatcttgactcaaaatcttaagatattgagtttatgagtcatctcacttatatgttgtt 461  Q
    ||||||| |||||||| ||||||| ||||||||||||| | || ||||||||||||||||    
T  7192822 acatctttactcaaaaccttaagacattgagtttatgatttatttcacttatatgttgtt 7192763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 414 - 454
Target Start/End: Original strand, 12421723 - 12421763
Alignment:
Q  414 aaaatcttaagatattgagtttatgagtcatctcacttata 454  Q
    |||||||||| ||||||||||||||| |||||||| |||||    
T  12421723 aaaatcttaaaatattgagtttatgaatcatctcagttata 12421763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 412 - 460
Target Start/End: Complemental strand, 26853858 - 26853810
Alignment:
Q  412 tcaaaatcttaagatattgagtttatgagtcatctcacttatatgttgt 460  Q
    |||||| |||||| ||||  ||||||||||| |||||||||||||||||    
T  26853858 tcaaaaccttaagttattaggtttatgagtcctctcacttatatgttgt 26853810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 394 - 464
Target Start/End: Original strand, 17229213 - 17229283
Alignment:
Q  394 tgaacactacatcttgactcaaaatcttaagatattgagtttatgagtcatctcacttatatgttgttcaa 464  Q
    ||||||| ||||||| | | |||| |||||| ||| ||||||||| ||||| |||||||||||||||||||    
T  17229213 tgaacaccacatcttaatttaaaaccttaaggtatcgagtttatgggtcatttcacttatatgttgttcaa 17229283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 413 - 458
Target Start/End: Complemental strand, 31053495 - 31053450
Alignment:
Q  413 caaaatcttaagatattgagtttatgagtcatctcacttatatgtt 458  Q
    ||||| ||| |||||||||||||||| |||||||||||||||||||    
T  31053495 caaaaccttgagatattgagtttatgggtcatctcacttatatgtt 31053450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 427 - 467
Target Start/End: Original strand, 31203167 - 31203207
Alignment:
Q  427 attgagtttatgagtcatctcacttatatgttgttcaatct 467  Q
    ||||||||||||||||||||| |||||| ||||||||||||    
T  31203167 attgagtttatgagtcatctctcttataagttgttcaatct 31203207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 397 - 464
Target Start/End: Complemental strand, 13365950 - 13365883
Alignment:
Q  397 acactacatcttgactcaaaatcttaagatattgagtttatgagtcatctcacttatatgttgttcaa 464  Q
    |||| |||||||||| ||||| |||||   ||||||||||||  |||||||| |||||||||||||||    
T  13365950 acaccacatcttgacacaaaaccttaatgcattgagtttatggatcatctcatttatatgttgttcaa 13365883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 390 - 484
Target Start/End: Complemental strand, 2336743 - 2336649
Alignment:
Q  390 gagttgaacactacatcttgactcaaaatcttaagatattgagtttatgagtcatctcacttatatgttgttcaatcttcactttactaatcaat 484  Q
    |||||| |||| ||||||| || ||||||||||||  ||||| |||||| ||| |||||||||||   ||||||| || |||||| |||| ||||    
T  2336743 gagttggacaccacatcttaacccaaaatcttaaggcattgaatttatgggtcctctcacttataaagtgttcaacctccacttttctaagcaat 2336649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 435 - 464
Target Start/End: Original strand, 5788863 - 5788892
Alignment:
Q  435 tatgagtcatctcacttatatgttgttcaa 464  Q
    ||||||||||||||||||||||||||||||    
T  5788863 tatgagtcatctcacttatatgttgttcaa 5788892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 384 - 464
Target Start/End: Complemental strand, 12454096 - 12454016
Alignment:
Q  384 ataagcgagttgaacactacatcttgactcaaaatcttaagatattgagtttatgagtcatctcacttatatgttgttcaa 464  Q
    ||||| || |||||||| || |||| | |||||| ||||| | |||   |||||| |||||||||||||||||||||||||    
T  12454096 ataagtgaattgaacaccacttcttcaatcaaaaacttaaaacattagatttatgggtcatctcacttatatgttgttcaa 12454016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 413 - 464
Target Start/End: Complemental strand, 20117250 - 20117199
Alignment:
Q  413 caaaatcttaagatattgagtttatgagtcatctcacttatatgttgttcaa 464  Q
    ||||| ||||||| ||||| |||||||||  |||||||||||||||||||||    
T  20117250 caaaaccttaagacattgaatttatgagtactctcacttatatgttgttcaa 20117199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 418 - 465
Target Start/End: Original strand, 19910580 - 19910627
Alignment:
Q  418 tcttaagatattgagtttatgagtcatctcacttatatgttgttcaat 465  Q
    ||||||| |||| ||| ||||| |||||||||||||||||||||||||    
T  19910580 tcttaaggtattaagtatatgactcatctcacttatatgttgttcaat 19910627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000005; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 375 - 437
Target Start/End: Complemental strand, 47493882 - 47493820
Alignment:
Q  375 agcaattatataagcgagttgaacactacatcttgactcaaaatcttaagatattgagtttat 437  Q
    |||||||||||||| |||||| ||   | ||||| ||||||||| ||||||||||||||||||    
T  47493882 agcaattatataagtgagttggacgtaatatcttaactcaaaattttaagatattgagtttat 47493820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 419 - 467
Target Start/End: Original strand, 93387 - 93435
Alignment:
Q  419 cttaagatattgagtttatgagtcatctcacttatatgttgttcaatct 467  Q
    ||||||| ||| |||||||||||| ||||| ||||| ||||||||||||    
T  93387 cttaagacattcagtttatgagtcctctcatttataggttgttcaatct 93435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 410 - 454
Target Start/End: Original strand, 1187423 - 1187467
Alignment:
Q  410 actcaaaatcttaagatattgagtttatgagtcatctcacttata 454  Q
    ||||||||||||||| || |||||||||| ||| |||||||||||    
T  1187423 actcaaaatcttaaggtaatgagtttatgggtcttctcacttata 1187467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0159 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0159
Description:

Target: scaffold0159; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 435 - 464
Target Start/End: Original strand, 33236 - 33265
Alignment:
Q  435 tatgagtcatctcacttatatgttgttcaa 464  Q
    ||||||||||||||||||||||||||||||    
T  33236 tatgagtcatctcacttatatgttgttcaa 33265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 420 - 465
Target Start/End: Original strand, 49428 - 49473
Alignment:
Q  420 ttaagatattgagtttatgagtcatctcacttatatgttgttcaat 465  Q
    |||||| ||||||| ||| ||||||||||||||||||||| |||||    
T  49428 ttaagacattgagtatattagtcatctcacttatatgttgctcaat 49473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University