View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1798_low_21 (Length: 351)
Name: NF1798_low_21
Description: NF1798
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1798_low_21 |
 | |
|
| [»] scaffold0631 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0631 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: scaffold0631
Description:
Target: scaffold0631; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 15 - 275
Target Start/End: Original strand, 7977 - 8237
Alignment:
| Q |
15 |
tcttgaacttttgcatccaactcttggaaaacggccattcattgaattgaaaatcgggacaccaatgtatacgattgtttgcattcctctaatataggcg |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||| ||| |||||| ||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
7977 |
tcttgaacttttgcatccaactcttggaaaacggccattcaatgaattgataattgggacatcaatgtatacgattgtttgcattcctcaaatataggcg |
8076 |
T |
|
| Q |
115 |
ttttgaagctgaatcagttgttttgaattgtggttgcattaaatatgggacaaaatatagtggaccaataacaacaaagagtcattggcgccaatagttg |
214 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8077 |
ttttgaagctgaatcggttgttttgaattgtggttgcattaaatatgggacaaaatatagtggaccaataacaacaaagagtcattggcgccaatagttg |
8176 |
T |
|
| Q |
215 |
tagaattagggttggcaatctttcttaacattgttattagtattagaaataagtaagataa |
275 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
8177 |
tagaattagggttggcaatctttcttaacattgttattagtattagaaataagtaggataa |
8237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 15 - 274
Target Start/End: Original strand, 15386176 - 15386434
Alignment:
| Q |
15 |
tcttgaacttttgcatccaactcttggaaaacggccattcattgaattgaaaatcgggacaccaatgtatacgattgtttgcattcctctaatataggcg |
114 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||| |||||||| ||| |||||| ||||||||| ||||||||||||||||| |||||||||| |
|
|
| T |
15386176 |
tcttgaacttttgcatccaattcttggaaaacggccattcaatgaattgataattgggacatcaatgtatatgattgtttgcattcctcaaatataggcg |
15386275 |
T |
|
| Q |
115 |
ttttgaagctgaatcagttgttttgaattgtggttgcattaaatatgggacaaaatatagtggaccaataacaacaaagagtcattggcgccaatagttg |
214 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
15386276 |
ttttgaagctgaattagttgttttgaattgtggttgcattaaatatgggacaaaatatagtggaccaat-acaacaaagagtcattggcgccaatagttg |
15386374 |
T |
|
| Q |
215 |
tagaattagggttggcaatctttcttaacattgttattagtattagaaataagtaagata |
274 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15386375 |
tagaattagggttggcaatctttcttaacattgttattagtattagaaataagtaagata |
15386434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 15 - 272
Target Start/End: Original strand, 38897176 - 38897433
Alignment:
| Q |
15 |
tcttgaacttttgcatccaactcttggaaaacggccattcattgaattgaaaatcgggacaccaatgtatacgattgtttgcattcctctaatataggcg |
114 |
Q |
| |
|
|||||||| ||||||| |||||||||||||||||||||||| |||||||| ||| |||||| ||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
38897176 |
tcttgaacctttgcatacaactcttggaaaacggccattcaatgaattgataattgggacatcaatgtatacgattgtttgcattcctcaaatataggcg |
38897275 |
T |
|
| Q |
115 |
ttttgaagctgaatcagttgttttgaattgtggttgcattaaatatgggacaaaatatagtggaccaataacaacaaagagtcattggcgccaatagttg |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38897276 |
ttttgaagctgaatcagttgttttgaattgtggttgcattaaatatgggacaaaatatagtggaccaataacaacaaagagtcattggcgccaatagttg |
38897375 |
T |
|
| Q |
215 |
tagaattagggttggcaatctttcttaacattgttattagtattagaaataagtaaga |
272 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||| |||||||||||||| |||| |
|
|
| T |
38897376 |
tagaattagggttgacaatctttcttaacattgttatttgtattagaaataagcaaga |
38897433 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 64; Significance: 6e-28; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 199 - 278
Target Start/End: Complemental strand, 24323602 - 24323523
Alignment:
| Q |
199 |
ttggcgccaatagttgtagaattagggttggcaatctttcttaacattgttattagtattagaaataagtaagataagat |
278 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
24323602 |
ttggcgccaatagttgtagatttagggttggcaacttttcttaacattgttattaggattagaaataagtaagataagat |
24323523 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 239 - 278
Target Start/End: Complemental strand, 32277072 - 32277034
Alignment:
| Q |
239 |
ttaacattgttattagtattagaaataagtaagataagat |
278 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
32277072 |
ttaacattgttattagtattagaaataa-taagataagat |
32277034 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 56; Significance: 4e-23; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 114 - 272
Target Start/End: Complemental strand, 44111539 - 44111380
Alignment:
| Q |
114 |
gttttgaagctgaatcagttgttttgaattgtggttgcattaaatatgggacaaaatatagtggaccaataacaacaaagagtcattggcgccaat-agt |
212 |
Q |
| |
|
|||||||| |||||| |||| || ||||||||| ||||| ||||||| | ||||||| |||| ||||| | | |||| ||||||| ||||| || |
|
|
| T |
44111539 |
gttttgaatctgaataagttattgtgaattgtgcttgcaataaatattgaacaaaatcaagtgagccaattagagcaaatgatcattggtgccaaagaga |
44111440 |
T |
|
| Q |
213 |
tgtagaattagggttggcaatctttcttaacattgttattagtattagaaataagtaaga |
272 |
Q |
| |
|
|||||||||||||||| |||| |||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
44111439 |
tgtagaattagggttgacaatttttcttaacattgttattagtattggaaataagtaaga |
44111380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 235 - 278
Target Start/End: Complemental strand, 26000056 - 26000013
Alignment:
| Q |
235 |
tttcttaacattgttattagtattagaaataagtaagataagat |
278 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26000056 |
tttcttaacattgttattagtattagaaataagtaagataagat |
26000013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 235 - 278
Target Start/End: Original strand, 44621440 - 44621483
Alignment:
| Q |
235 |
tttcttaacattgttattagtattagaaataagtaagataagat |
278 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44621440 |
tttcttaacattgttattagtattagaaataagtaagataagat |
44621483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 235 - 278
Target Start/End: Complemental strand, 47932449 - 47932406
Alignment:
| Q |
235 |
tttcttaacattgttattagtattagaaataagtaagataagat |
278 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||| ||||||| |
|
|
| T |
47932449 |
tttcttaacattgttattagtattagaattaagtaaaataagat |
47932406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 235 - 273
Target Start/End: Original strand, 34509420 - 34509458
Alignment:
| Q |
235 |
tttcttaacattgttattagtattagaaataagtaagat |
273 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34509420 |
tttcttaacattgttattagtattagaaataagtaagat |
34509458 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 239 - 275
Target Start/End: Original strand, 37938453 - 37938489
Alignment:
| Q |
239 |
ttaacattgttattagtattagaaataagtaagataa |
275 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||| |
|
|
| T |
37938453 |
ttaacattgttattagcattagaaataagtaagataa |
37938489 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University