View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1798_low_23 (Length: 347)

Name: NF1798_low_23
Description: NF1798
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1798_low_23
NF1798_low_23
[»] chr1 (3 HSPs)
chr1 (17-330)||(44128195-44128508)
chr1 (17-330)||(44132400-44132713)
chr1 (17-330)||(44140822-44141135)
[»] chr7 (11 HSPs)
chr7 (174-330)||(5283890-5284046)
chr7 (174-330)||(5290081-5290237)
chr7 (174-330)||(5302078-5302234)
chr7 (174-330)||(5309715-5309871)
chr7 (174-330)||(5314532-5314688)
chr7 (20-92)||(46707179-46707251)
chr7 (17-66)||(5310282-5310331)
chr7 (18-66)||(5284193-5284241)
chr7 (18-66)||(5314996-5315044)
chr7 (18-66)||(5289886-5289934)
chr7 (18-66)||(5302381-5302429)
[»] chr5 (9 HSPs)
chr5 (175-330)||(1491617-1491772)
chr5 (169-324)||(1504387-1504542)
chr5 (170-330)||(1481727-1481887)
chr5 (174-327)||(1477619-1477772)
chr5 (174-327)||(1485466-1485621)
chr5 (17-122)||(1504807-1504911)
chr5 (176-330)||(1496827-1496981)
chr5 (27-66)||(1482078-1482117)
chr5 (27-66)||(1477884-1477923)
[»] chr2 (2 HSPs)
chr2 (174-330)||(24165436-24165592)
chr2 (21-62)||(24163982-24164023)
[»] chr3 (3 HSPs)
chr3 (178-273)||(37863716-37863811)
chr3 (178-234)||(37859726-37859782)
chr3 (178-234)||(39029635-39029691)


Alignment Details
Target: chr1 (Bit Score: 290; Significance: 1e-163; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 17 - 330
Target Start/End: Complemental strand, 44128508 - 44128195
Alignment:
Q  17 ctctgttaggtacatatatctcctcttgatcatagatttatcacctgaagggaattatgaaaagatgatattagttcaacaaaacttgggtgataagaaa 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  44128508 ctctgttaggtacatatatctcctcttgatcatagatttatcacctgaagggaattatgaaaagatgatattagttcaacaaaacttgggtgttaagaaa 44128409  T
Q  117 ccaatgtaaagatagcaaaatatatttaaatggaaagtatctaaggtagagggaaaaaatacttacacatgcgttggaatttctctttgagttcagtctt 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44128408 ccaatgtaaagatagcaaaatatatttaaatggaaagtatctaaggtagagggaaaaaatacttacacatgcgttggaatttctctttgagttcagtctt 44128309  T
Q  217 gtgttcactatttgtgattttaaagtagaaatcaggatatgtgctttgttcaacacaattggctgggtttgcagttccaatggccaatatagttgcaggg 316  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || || |||||||||    
T  44128308 gtgttcactatttgtgattttgaagtagaaatcaggatatgtgctttgttcaacacaattggctgggtttgcagtgccaatggctaaaatggttgcaggg 44128209  T
Q  317 ccttctgccctttg 330  Q
    ||||||||||||||    
T  44128208 ccttctgccctttg 44128195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 17 - 330
Target Start/End: Complemental strand, 44132713 - 44132400
Alignment:
Q  17 ctctgttaggtacatatatctcctcttgatcatagatttatcacctgaagggaattatgaaaagatgatattagttcaacaaaacttgggtgataagaaa 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  44132713 ctctgttaggtacatatatctcctcttgatcatagatttatcacctgaagggaattatgaaaagatgatattagttcaacaaaacttgggtgttaagaaa 44132614  T
Q  117 ccaatgtaaagatagcaaaatatatttaaatggaaagtatctaaggtagagggaaaaaatacttacacatgcgttggaatttctctttgagttcagtctt 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44132613 ccaatgtaaagatagcaaaatatatttaaatggaaagtatctaaggtagagggaaaaaatacttacacatgcgttggaatttctctttgagttcagtctt 44132514  T
Q  217 gtgttcactatttgtgattttaaagtagaaatcaggatatgtgctttgttcaacacaattggctgggtttgcagttccaatggccaatatagttgcaggg 316  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || || |||||||||    
T  44132513 gtgttcactatttgtgattttgaagtagaaatcaggatatgtgctttgttcaacacaattggctgggtttgcagtgccaatggctaaaatggttgcaggg 44132414  T
Q  317 ccttctgccctttg 330  Q
    ||||||||||||||    
T  44132413 ccttctgccctttg 44132400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 17 - 330
Target Start/End: Complemental strand, 44141135 - 44140822
Alignment:
Q  17 ctctgttaggtacatatatctcctcttgatcatagatttatcacctgaagggaattatgaaaagatgatattagttcaacaaaacttgggtgataagaaa 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  44141135 ctctgttaggtacatatatctcctcttgatcatagatttatcacctgaagggaattatgaaaagatgatattagttcaacaaaacttgggtgttaagaaa 44141036  T
Q  117 ccaatgtaaagatagcaaaatatatttaaatggaaagtatctaaggtagagggaaaaaatacttacacatgcgttggaatttctctttgagttcagtctt 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44141035 ccaatgtaaagatagcaaaatatatttaaatggaaagtatctaaggtagagggaaaaaatacttacacatgcgttggaatttctctttgagttcagtctt 44140936  T
Q  217 gtgttcactatttgtgattttaaagtagaaatcaggatatgtgctttgttcaacacaattggctgggtttgcagttccaatggccaatatagttgcaggg 316  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || || |||||||||    
T  44140935 gtgttcactatttgtgattttgaagtagaaatcaggatatgtgctttgttcaacacaattggctgggtttgcagtgccaatggctaaaatggttgcaggg 44140836  T
Q  317 ccttctgccctttg 330  Q
    ||||||||||||||    
T  44140835 ccttctgccctttg 44140822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 109; Significance: 9e-55; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 174 - 330
Target Start/End: Complemental strand, 5284046 - 5283890
Alignment:
Q  174 aatacttacacatgcgttggaatttctctttgagttcagtcttgtgttcactatttgtgattttaaagtagaaatcaggatatgtgctttgttcaacaca 273  Q
    |||||||||||||||| || ||||||||||| |||||||| ||||||||||| ||||||||||||||||| ||||||||||| |||||||||||||||||    
T  5284046 aatacttacacatgcgctgaaatttctctttaagttcagttttgtgttcactgtttgtgattttaaagtaaaaatcaggatacgtgctttgttcaacaca 5283947  T
Q  274 attggctgggtttgcagttccaatggccaatatagttgcagggccttctgccctttg 330  Q
    ||| ||||| |||||||| ||||||||||| || |||||||||||||||||||||||    
T  5283946 atttgctggatttgcagtcccaatggccaagatggttgcagggccttctgccctttg 5283890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 174 - 330
Target Start/End: Original strand, 5290081 - 5290237
Alignment:
Q  174 aatacttacacatgcgttggaatttctctttgagttcagtcttgtgttcactatttgtgattttaaagtagaaatcaggatatgtgctttgttcaacaca 273  Q
    |||||||||||||||| || |||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||||||||| |||||||||||||||||    
T  5290081 aatacttacacatgcgctgaaatttctctttgagttcagttttgtgttcactatttgtaattttaaagtaaaaatcaggataagtgctttgttcaacaca 5290180  T
Q  274 attggctgggtttgcagttccaatggccaatatagttgcagggccttctgccctttg 330  Q
    ||| ||||| |||||||| |||||||| || ||||||||||| ||||||||||||||    
T  5290181 atttgctggatttgcagtgccaatggctaagatagttgcaggaccttctgccctttg 5290237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 174 - 330
Target Start/End: Complemental strand, 5302234 - 5302078
Alignment:
Q  174 aatacttacacatgcgttggaatttctctttgagttcagtcttgtgttcactatttgtgattttaaagtagaaatcaggatatgtgctttgttcaacaca 273  Q
    |||||||||||||||| || |||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||||||||| |||||||||||||||||    
T  5302234 aatacttacacatgcgctgaaatttctctttgagttcagttttgtgttcactatttgtaattttaaagtaaaaatcaggataagtgctttgttcaacaca 5302135  T
Q  274 attggctgggtttgcagttccaatggccaatatagttgcagggccttctgccctttg 330  Q
    ||| ||||| |||||||| |||||||| || ||||||||||| ||||||||||||||    
T  5302134 atttgctggatttgcagtgccaatggctaagatagttgcaggaccttctgccctttg 5302078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 174 - 330
Target Start/End: Complemental strand, 5309871 - 5309715
Alignment:
Q  174 aatacttacacatgcgttggaatttctctttgagttcagtcttgtgttcactatttgtgattttaaagtagaaatcaggatatgtgctttgttcaacaca 273  Q
    |||||||||||||||| || |||||||| || |||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  5309871 aatacttacacatgcgctgaaatttctccttaagttcagttttgtgttcactatttgtgattttaaagtaaaaatcaggatatgtgctttgttcaacaca 5309772  T
Q  274 attggctgggtttgcagttccaatggccaatatagttgcagggccttctgccctttg 330  Q
    ||| ||||| |||||||| ||||||||||| ||||||||||| |||||||| |||||    
T  5309771 atttgctggatttgcagtaccaatggccaaaatagttgcaggaccttctgctctttg 5309715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 174 - 330
Target Start/End: Complemental strand, 5314688 - 5314532
Alignment:
Q  174 aatacttacacatgcgttggaatttctctttgagttcagtcttgtgttcactatttgtgattttaaagtagaaatcaggatatgtgctttgttcaacaca 273  Q
    |||||||||||||||| || ||||||||||||||||||   ||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||    
T  5314688 aatacttacacatgcgctgaaatttctctttgagttcaactttgtgttcactatttgtaattttaaagtaaaaatcaggatatgtgctttgttcaacaca 5314589  T
Q  274 attggctgggtttgcagttccaatggccaatatagttgcagggccttctgccctttg 330  Q
    ||| ||||| |||||||| ||||||||||| || |||||||| |||||||| |||||    
T  5314588 atttgctggatttgcagtaccaatggccaaaatggttgcaggaccttctgctctttg 5314532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 20 - 92
Target Start/End: Original strand, 46707179 - 46707251
Alignment:
Q  20 tgttaggtacatatatctcctcttgatcatagatttatcacctgaagggaattatgaaaagatgatattagtt 92  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| | |||||||||||||    
T  46707179 tgttaggtacatgtatctcctcttgatcatagatttatcacctgaaggtaattatgataggatgatattagtt 46707251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 17 - 66
Target Start/End: Complemental strand, 5310331 - 5310282
Alignment:
Q  17 ctctgttaggtacatatatctcctcttgatcatagatttatcacctgaag 66  Q
    ||||||||| ||||| ||||||||||||||||||||||||||||||||||    
T  5310331 ctctgttagatacatgtatctcctcttgatcatagatttatcacctgaag 5310282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 18 - 66
Target Start/End: Complemental strand, 5284241 - 5284193
Alignment:
Q  18 tctgttaggtacatatatctcctcttgatcatagatttatcacctgaag 66  Q
    |||||||| ||||| ||||||||||||||||||||||||||||||||||    
T  5284241 tctgttagatacatgtatctcctcttgatcatagatttatcacctgaag 5284193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 18 - 66
Target Start/End: Complemental strand, 5315044 - 5314996
Alignment:
Q  18 tctgttaggtacatatatctcctcttgatcatagatttatcacctgaag 66  Q
    |||||||| ||||| ||||||||||||||||||||||||||||||||||    
T  5315044 tctgttagatacatgtatctcctcttgatcatagatttatcacctgaag 5314996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 18 - 66
Target Start/End: Original strand, 5289886 - 5289934
Alignment:
Q  18 tctgttaggtacatatatctcctcttgatcatagatttatcacctgaag 66  Q
    |||||||| ||||| ||||||||||||||||| ||||||||||||||||    
T  5289886 tctgttagatacatgtatctcctcttgatcatggatttatcacctgaag 5289934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 18 - 66
Target Start/End: Complemental strand, 5302429 - 5302381
Alignment:
Q  18 tctgttaggtacatatatctcctcttgatcatagatttatcacctgaag 66  Q
    |||||||| ||||| ||||||||||||||||| ||||||||||||||||    
T  5302429 tctgttagatacatgtatctcctcttgatcatggatttatcacctgaag 5302381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 108; Significance: 3e-54; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 175 - 330
Target Start/End: Complemental strand, 1491772 - 1491617
Alignment:
Q  175 atacttacacatgcgttggaatttctctttgagttcagtcttgtgttcactatttgtgattttaaagtagaaatcaggatatgtgctttgttcaacacaa 274  Q
    |||||||||||||||||| ||||| |||||||| ||||| |||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||     
T  1491772 atacttacacatgcgttgaaatttttctttgagctcagttttgtgttcgctatttgtgattttaaagtaaaaatcaggatatgtgctttgttcaacacag 1491673  T
Q  275 ttggctgggtttgcagttccaatggccaatatagttgcagggccttctgccctttg 330  Q
    || ||||| |||||||| |||||||||||||| |||||||| ||||||||||||||    
T  1491672 tttgctggatttgcagtgccaatggccaatatggttgcaggaccttctgccctttg 1491617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 169 - 324
Target Start/End: Complemental strand, 1504542 - 1504387
Alignment:
Q  169 gaaaaaatacttacacatgcgttggaatttctctttgagttcagtcttgtgttcactatttgtgattttaaagtagaaatcaggatatgtgctttgttca 268  Q
    ||||||| |||||||||||||||| |||||||||||||||||||| ||||||||||| ||||||||| ||||||||||||||||||||||||||||||||    
T  1504542 gaaaaaacacttacacatgcgttgaaatttctctttgagttcagttttgtgttcactgtttgtgattctaaagtagaaatcaggatatgtgctttgttca 1504443  T
Q  269 acacaattggctgggtttgcagttccaatggccaatatagttgcagggccttctgc 324  Q
    |||||||| | ||| |||||||| ||||||||||| || |||||||| ||||||||    
T  1504442 acacaatttggtggatttgcagtgccaatggccaaaatggttgcaggaccttctgc 1504387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 170 - 330
Target Start/End: Complemental strand, 1481887 - 1481727
Alignment:
Q  170 aaaaaatacttacacatgcgttggaatttctctttgagttcagtcttgtgttcactatttgtgattttaaagtagaaatcaggatatgtgctttgttcaa 269  Q
    ||||| ||||||||||||||||| ||||| |||||||||||    || || ||||| ||||||||||||||||| |||||||||||||||||||||||||    
T  1481887 aaaaagtacttacacatgcgttgaaatttttctttgagttcgactttatgctcactgtttgtgattttaaagtaaaaatcaggatatgtgctttgttcaa 1481788  T
Q  270 cacaattggctgggtttgcagttccaatggccaatatagttgcagggccttctgccctttg 330  Q
    |||| || ||||| |||||||| |||||||||||||| |||||||| ||||||||||||||    
T  1481787 cacagtttgctggatttgcagtgccaatggccaatatggttgcaggaccttctgccctttg 1481727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 174 - 327
Target Start/End: Complemental strand, 1477772 - 1477619
Alignment:
Q  174 aatacttacacatgcgttggaatttctctttgagttcagtcttgtgttcactatttgtgattttaaagtagaaatcaggatatgtgctttgttcaacaca 273  Q
    ||||||||||||||||||| ||||| ||||| ||||||   ||||| ||||| ||||||||||| ||||| |||||||||||||||||||||||||||||    
T  1477772 aatacttacacatgcgttgaaatttttctttaagttcaactttgtgctcactgtttgtgattttgaagtaaaaatcaggatatgtgctttgttcaacaca 1477673  T
Q  274 attggctgggtttgcagttccaatggccaatatagttgcagggccttctgccct 327  Q
     |||||||| |||||||| ||||||||||  || || |||||||||||||||||    
T  1477672 gttggctggatttgcagtgccaatggccatgatggtggcagggccttctgccct 1477619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 174 - 327
Target Start/End: Complemental strand, 1485621 - 1485466
Alignment:
Q  174 aatacttacacatgcgttggaatttctctttgagttcagtcttgtgttcactatttgtgattttaaagta--gaaatcaggatatgtgctttgttcaaca 271  Q
    |||||||||| ||||| || ||||||||| ||||||  |||||||| || ||||||| |||| | |||||  ||||||||||||||||||||||||||||    
T  1485621 aatacttacaaatgcgctgaaatttctctctgagttgcgtcttgtgctcgctatttgcgattctgaagtatagaaatcaggatatgtgctttgttcaaca 1485522  T
Q  272 caattggctgggtttgcagttccaatggccaatatagttgcagggccttctgccct 327  Q
    ||||| | ||| ||||||||||| |||||||| ||  |||||||||||||||||||    
T  1485521 caatttggtggatttgcagttcctatggccaagatgattgcagggccttctgccct 1485466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 17 - 122
Target Start/End: Complemental strand, 1504911 - 1504807
Alignment:
Q  17 ctctgttaggtacatatatctcctcttgatcatagatttatcacctgaagggaattatgaaaagatgatattagttcaacaaaacttgggtgataagaaa 116  Q
    ||||||||||||||| ||||| ||||| ||||||||||||||||||||||| ||||||||| |||||||||||||||||| ||| |||||||||| ||||    
T  1504911 ctctgttaggtacatgtatcttctcttaatcatagatttatcacctgaaggtaattatgaagagatgatattagttcaac-aaatttgggtgatacgaaa 1504813  T
Q  117 ccaatg 122  Q
     |||||    
T  1504812 tcaatg 1504807  T

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Target: chr5; HSP #7
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 176 - 330
Target Start/End: Complemental strand, 1496981 - 1496827
Alignment:
Q  176 tacttacacatgcgttggaatttctctttgagttcagtcttgtgttcactatttgtgattttaaagtagaaatcaggatatgtgctttgttcaacacaat 275  Q
    |||| ||| ||||| |||||||||| ||| | |||||||||||| ||| | ||||||| | | || |||| ||||||||||||||||||||||| |||||    
T  1496981 tactaacatatgcgctggaatttcttttttaattcagtcttgtgctcattgtttgtgactctgaaatagagatcaggatatgtgctttgttcaatacaat 1496882  T
Q  276 tggctgggtttgcagttccaatggccaatatagttgcagggccttctgccctttg 330  Q
    | | ||| |||||||| ||||| || || ||||||| ||||||||||||||||||    
T  1496881 ttgttggatttgcagtgccaatagctaagatagttgtagggccttctgccctttg 1496827  T

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Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 27 - 66
Target Start/End: Complemental strand, 1482117 - 1482078
Alignment:
Q  27 tacatatatctcctcttgatcatagatttatcacctgaag 66  Q
    ||||| ||||||||||||||||||||||||||||||||||    
T  1482117 tacatgtatctcctcttgatcatagatttatcacctgaag 1482078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 27 - 66
Target Start/End: Complemental strand, 1477923 - 1477884
Alignment:
Q  27 tacatatatctcctcttgatcatagatttatcacctgaag 66  Q
    ||||| ||||||||||||||||| ||||||||||||||||    
T  1477923 tacatgtatctcctcttgatcatggatttatcacctgaag 1477884  T

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Target: chr2 (Bit Score: 89; Significance: 7e-43; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 174 - 330
Target Start/End: Original strand, 24165436 - 24165592
Alignment:
Q  174 aatacttacacatgcgttggaatttctctttgagttcagtcttgtgttcactatttgtgattttaaagtagaaatcaggatatgtgctttgttcaacaca 273  Q
    |||||||||| |||||||| ||||| ||||||||||   ||||||| || || ||||||| | |||||||||||||||||||||||||||||||||||||    
T  24165436 aatacttacaaatgcgttgaaatttttctttgagtttgatcttgtgctcgctgtttgtgactctaaagtagaaatcaggatatgtgctttgttcaacaca 24165535  T
Q  274 attggctgggtttgcagttccaatggccaatatagttgcagggccttctgccctttg 330  Q
     || | ||| |||||||| ||||||||||| ||||||||||||||||||||||||||    
T  24165536 gtttggtggatttgcagtgccaatggccaagatagttgcagggccttctgccctttg 24165592  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 21 - 62
Target Start/End: Original strand, 24163982 - 24164023
Alignment:
Q  21 gttaggtacatatatctcctcttgatcatagatttatcacct 62  Q
    ||||||||||| ||||||||||||||||||| ||||||||||    
T  24163982 gttaggtacatgtatctcctcttgatcatagttttatcacct 24164023  T

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Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 178 - 273
Target Start/End: Original strand, 37863716 - 37863811
Alignment:
Q  178 cttacacatgcgttggaatttctctttgagttcagtcttgtgttcactatttgtgattttaaagtagaaatcaggatatgtgctttgttcaacaca 273  Q
    |||||||||||| |||||||| ||| |||||||||| ||||||||||| ||||||||    ||||| || ||||||||||| || || ||||||||    
T  37863716 cttacacatgcgctggaatttttctctgagttcagttttgtgttcactgtttgtgatacggaagtaaaagtcaggatatgtactctgatcaacaca 37863811  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 178 - 234
Target Start/End: Original strand, 37859726 - 37859782
Alignment:
Q  178 cttacacatgcgttggaatttctctttgagttcagtcttgtgttcactatttgtgat 234  Q
    |||||||||||| || ||||| |||||||| |||||||| |||||||| ||||||||    
T  37859726 cttacacatgcgctgaaatttttctttgagctcagtcttatgttcactgtttgtgat 37859782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 178 - 234
Target Start/End: Complemental strand, 39029691 - 39029635
Alignment:
Q  178 cttacacatgcgttggaatttctctttgagttcagtcttgtgttcactatttgtgat 234  Q
    |||||||||||| || ||||| ||||| || || |||||||| ||||||||||||||    
T  39029691 cttacacatgcgctgaaatttttctttcagctctgtcttgtgctcactatttgtgat 39029635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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