View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1798_low_24 (Length: 346)
Name: NF1798_low_24
Description: NF1798
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1798_low_24 |
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Alignment Details
Target: chr6 (Bit Score: 150; Significance: 3e-79; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 172 - 336
Target Start/End: Original strand, 32146147 - 32146314
Alignment:
| Q |
172 |
tatcttaattttggcattattttgcatattattgattttggtcttaaacaagattgttat---tattatattgtatgctatttgtttatgccagaagaca |
268 |
Q |
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| T |
32146147 |
tatcttaattttggcattattttgcatattattgattttggtcttaaacaagattgttattattattatattgtatgctatttgtttatgccagaagaca |
32146246 |
T |
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| Q |
269 |
attttaatgatagttcacattgtatcctaaagtttttgttgtttataacttatcattcttaacctttg |
336 |
Q |
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| T |
32146247 |
attttaatgatagtttacattgtatcctaaagtttttgttgtttataacttatcattcttaacctttg |
32146314 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 20 - 155
Target Start/End: Original strand, 32144901 - 32145035
Alignment:
| Q |
20 |
caatttattgttttcggtgaagacaaattttgccctcgtttcatgtcatgttaaaaactaaatttcatcgtaacaatttttaaacaaactagtcaagtat |
119 |
Q |
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| T |
32144901 |
caatttattgttttcggtgaagacaaattttgccctcgtttcatgtcatgttaaaa-ctaaatttcatcgtaacaatttttaaacaaactagtcaagtat |
32144999 |
T |
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| Q |
120 |
tcattcactatcaatttgaaagttaaaattgaactt |
155 |
Q |
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| T |
32145000 |
tcattcactatcaatttgaaagttaaaattgaactt |
32145035 |
T |
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