View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1798_low_26 (Length: 344)
Name: NF1798_low_26
Description: NF1798
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1798_low_26 |
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Alignment Details
Target: chr3 (Bit Score: 316; Significance: 1e-178; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 16 - 331
Target Start/End: Original strand, 42150361 - 42150676
Alignment:
| Q |
16 |
ataaaatatatgagaatctagagcacttacttaggcaacccaaatacttgacagcgcaatcattttcaaacaagtggatatcagctcatggtgcacatat |
115 |
Q |
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| T |
42150361 |
ataaaatatatgagaatctagagcacttacttaggcaacccaaatacttgacagcgcaatcattttcaaacaagtggatatcagctcatggtgcacatat |
42150460 |
T |
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| Q |
116 |
cacaaaaagaataagaagaataaataccagacatgttttctatggatttaactcttctaaagtgagaagttcatttgaagacatagagttaccaatttaa |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42150461 |
cacaaaaagaataagaagaataaataccagacatgttttctatggatttaactcttctaaagtgagaagttcatttgaagacatagagttaccaatttaa |
42150560 |
T |
|
| Q |
216 |
attgttgattgaatgggtgataatgtgataaaatacatatgcatttatagccaaaatcatgtagtaaaatctatcatcctcaacatcaaagaaagaaaaa |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42150561 |
attgttgattgaatgggtgataatgtgataaaatacatatgcatttatagccaaaatcatgtagtaaaatctatcatcctcaacatcaaagaaagaaaaa |
42150660 |
T |
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| Q |
316 |
atctatcatcctcttc |
331 |
Q |
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|||||||||||||||| |
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| T |
42150661 |
atctatcatcctcttc |
42150676 |
T |
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