View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1798_low_27 (Length: 338)
Name: NF1798_low_27
Description: NF1798
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1798_low_27 |
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| [»] scaffold0631 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 167; Significance: 2e-89; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 13 - 218
Target Start/End: Complemental strand, 15386216 - 15386010
Alignment:
| Q |
13 |
tgaatggccgttttccaagcgttggatgcaaaagttcaagagttatc-gcctactatatattcatccattcggagtttttgatgctccttcatcccttgc |
111 |
Q |
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| T |
15386216 |
tgaatggccgttttccaagaattggatgcaaaagttcaagagttgtcagcctactatatattcatccattcagagtttctgatgctacttcatcccttgc |
15386117 |
T |
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| Q |
112 |
tattgcggattcatggcgcaccaacataacatccaagctatgctttcatatcaaatgttaataggtaattctccaaagtctgaaacttttttattcatga |
211 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
15386116 |
tattgcggattcatggcgcaccaacataacatccaaactatgctttcatatcaaatgttaataggtaattctccaaagtctgaaactttattattcatga |
15386017 |
T |
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| Q |
212 |
tttctac |
218 |
Q |
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||||||| |
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| T |
15386016 |
tttctac |
15386010 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0631 (Bit Score: 165; Significance: 3e-88; HSPs: 1)
Name: scaffold0631
Description:
Target: scaffold0631; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 13 - 301
Target Start/End: Complemental strand, 8017 - 7725
Alignment:
| Q |
13 |
tgaatggccgttttccaagcgttggatgcaaaagttcaagagttatc-gcctactatatattcatccattcggagtttttgatgctccttcatcccttgc |
111 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||| || |||||||||||||| |||||||| |||||| ||||||||||||||||||||| |
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| T |
8017 |
tgaatggccgttttccaagagttggatgcaaaagttcaagagttgtcagcctactatatatttatccattcagagtttctgatgctccttcatcccttgc |
7918 |
T |
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| Q |
112 |
tattgcggattcatggcgcaccaacataacatccaagctatgctttcatatcaaatgttaataggtaattctccaaagtctgaaacttttttattcatga |
211 |
Q |
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| T |
7917 |
tattgcggattcatggcgcaccaacataacatccaagctatgctttcatatcaaatgttaataggtaattctccaaagtgtgaaaaaaaattattcatga |
7818 |
T |
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| Q |
212 |
tttctac---nnnnnnnaatgcaatgatccaaataatgatcttannnnnnnaaatgtttgcagcaccagtgtatcccaatcccactactgata |
301 |
Q |
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| T |
7817 |
tttctacttttttttttattgcaatgatccaaataatgatctgatttttttaaatgtttgcagcaccgttgtatcccaatccaactactgata |
7725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 151; Significance: 7e-80; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 151; E-Value: 7e-80
Query Start/End: Original strand, 13 - 218
Target Start/End: Complemental strand, 38897216 - 38897010
Alignment:
| Q |
13 |
tgaatggccgttttccaagcgttggatgcaaaagttcaagagttatc-gcctactatatattcatccattcggagtttttgatgctccttcatcccttgc |
111 |
Q |
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||||||||||||||||||| |||| ||||||| ||||||||||| || ||||||||||||||||| ||||| |||||| |||||||||||||||||||| |
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| T |
38897216 |
tgaatggccgttttccaagagttgtatgcaaaggttcaagagttgtcagcctactatatattcattcattcagagtttccgatgctccttcatcccttgc |
38897117 |
T |
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| Q |
112 |
tattgcggattcatggcgcaccaacataacatccaagctatgctttcatatcaaatgttaataggtaattctccaaagtctgaaacttttttattcatga |
211 |
Q |
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| T |
38897116 |
tgttgcggattcatggagcaccaacataacatccaagctatgctttcatatcaaatgttaataggtaactctccaaagtctgaaacttttttattcataa |
38897017 |
T |
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| Q |
212 |
tttctac |
218 |
Q |
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||||||| |
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| T |
38897016 |
tttctac |
38897010 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 133; Significance: 4e-69; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 41 - 216
Target Start/End: Original strand, 24324049 - 24324225
Alignment:
| Q |
41 |
caaaagttcaagagttatc-gcctactatatattcatccattcggagtttttgatgctccttcatcccttgctattgcggattcatggcgcaccaacata |
139 |
Q |
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|||||||||||||||| || |||||||||||| |||| ||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24324049 |
caaaagttcaagagttgtcagcctactatatactcatacattctgagtttctgatgctccttcatcccttgctattgcggattcatggcgcaccaacata |
24324148 |
T |
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| Q |
140 |
acatccaagctatgctttcatatcaaatgttaataggtaattctccaaagtctgaaacttttttattcatgatttct |
216 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||| | || |||||||||||||||||||||| |
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| T |
24324149 |
acgtccaagctatgctttcatatcaaatgttaataggtaattctccaaattttgtaacttttttattcatgatttct |
24324225 |
T |
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