View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1798_low_29 (Length: 324)
Name: NF1798_low_29
Description: NF1798
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1798_low_29 |
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| [»] scaffold0103 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 260; Significance: 1e-145; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 16 - 312
Target Start/End: Original strand, 2566282 - 2566578
Alignment:
| Q |
16 |
acacaaaccatttactcgaatgctataaccattatctaagctcttttgaacaaaaaaccaatatcaaagctgcttcaaaaagaaaatcgaataccaacgc |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || |
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| T |
2566282 |
acacaaaccatttactcgaatgctataaccattatctaagctcttttgaacaaaaaaccaatatcaaagctgcttcaaaaagaaaatctaataccaaggc |
2566381 |
T |
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| Q |
116 |
ttcattgtnnnnnnntaattcaaaaactaagaaaattagttagaattctgctacaaatgattttcatacctcattctttggtaaattagttagaaggcac |
215 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2566382 |
ttcattgtaaaaaaataattcaaaaactaagaaaattagttagaattctgctacaaatgattttcatacctcattctttggtaaattagttagaaggcac |
2566481 |
T |
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| Q |
216 |
aaagaatttccaatctctttttaacattataatgtacactcatatgaaactaagaaatagtttaagaggagatggggattgttagtcaataacattc |
312 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2566482 |
aaagaatttccaaactctttttaacattataatgtacactcatgtgaaactaagaaatagtttaagaggagatggggattgttagtcaataacattc |
2566578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 169 - 312
Target Start/End: Complemental strand, 2671483 - 2671339
Alignment:
| Q |
169 |
caaatgattttcatacctcattctttggtaaattagttagaaggcacaaagaa-tttccaatctctttttaacattataatgtacactcatatgaaacta |
267 |
Q |
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|||||||||||||||||||| ||||||| |||||||||||||| | ||||||| ||| |||||||| | ||| || ||||||||||||||| |||||||| |
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| T |
2671483 |
caaatgattttcatacctcactctttggaaaattagttagaagccccaaagaatttttcaatctctctctaatatgataatgtacactcatgtgaaacta |
2671384 |
T |
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| Q |
268 |
agaaatagtttaagaggagatggggattgttagtcaataacattc |
312 |
Q |
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| T |
2671383 |
agaaagatttgaagagtagatggtgtttatcagtcaataacattc |
2671339 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 169 - 277
Target Start/End: Original strand, 2635222 - 2635331
Alignment:
| Q |
169 |
caaatgattttcatacctcattctttggtaaattagttagaaggcacaaagaa-tttccaatctctttttaacattataatgtacactcatatgaaacta |
267 |
Q |
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|||||||||||||||||||| |||||| | |||||||||| |||||||| || ||| ||||| || | |||||||||||||||| ||||| ||||||| |
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| T |
2635222 |
caaatgattttcatacctcacactttggaatattagttagacggcacaaataacttttcaatcactatctaacattataatgtactctcatgcgaaacta |
2635321 |
T |
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| Q |
268 |
agaaatagtt |
277 |
Q |
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|||||||||| |
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| T |
2635322 |
agaaatagtt |
2635331 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 169 - 277
Target Start/End: Original strand, 2593247 - 2593356
Alignment:
| Q |
169 |
caaatgattttcatacctcattctttggtaaattagttagaaggcacaaagaa-tttccaatctctttttaacattataatgtacactcatatgaaacta |
267 |
Q |
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|||||||||||||||||||| |||| | |||||||||||| |||||| || ||||||||| | | ||||| || ||| ||||||||| |||||| | |
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| T |
2593247 |
caaatgattttcatacctcaaactttagaaaattagttagaccacacaaataactttccaatcaatatctaacaatacaatatacactcatgtgaaacca |
2593346 |
T |
|
| Q |
268 |
agaaatagtt |
277 |
Q |
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||||| |||| |
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| T |
2593347 |
agaaagagtt |
2593356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 169 - 214
Target Start/End: Complemental strand, 2595592 - 2595547
Alignment:
| Q |
169 |
caaatgattttcatacctcattctttggtaaattagttagaaggca |
214 |
Q |
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| T |
2595592 |
caaatgattttcataccttgctctttgggaaattagttagaaggca |
2595547 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0103 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0103
Description:
Target: scaffold0103; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 169 - 277
Target Start/End: Complemental strand, 4787 - 4678
Alignment:
| Q |
169 |
caaatgattttcatacctcattctttggtaaattagttagaaggcacaaagaa-tttccaatctctttttaacattataatgtacactcatatgaaacta |
267 |
Q |
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|||||||||||||||||||| |||||| | |||||||||| |||||||| || ||| ||||| || | |||||||||||||||| ||||| ||||||| |
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| T |
4787 |
caaatgattttcatacctcacactttggaatattagttagacggcacaaataacttttcaatcactatctaacattataatgtactctcatgcgaaacta |
4688 |
T |
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| Q |
268 |
agaaatagtt |
277 |
Q |
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|||||||||| |
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| T |
4687 |
agaaatagtt |
4678 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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