View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1798_low_31 (Length: 319)
Name: NF1798_low_31
Description: NF1798
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1798_low_31 |
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Alignment Details
Target: chr8 (Bit Score: 180; Significance: 3e-97; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 15 - 210
Target Start/End: Complemental strand, 28922558 - 28922363
Alignment:
| Q |
15 |
gactaaagatagtatttatttatcttattttattactataatgctttagaatttgtattatgatgaatacaagtgtgtgtagaccgttgttatggagtct |
114 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| |
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| T |
28922558 |
gactaaagatagtatttatttatcttattttatcactataatgctttagaatttgtatcatgatgaatacaagtgtgtgtagaccgttgttgtggagtct |
28922459 |
T |
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| Q |
115 |
gtggcgttttgcatgtatgttttcacaatgcaaattgcatgattttcattgtcgtgctagtcgtgtggtaaagggcgtcgtgctacatagcaccgc |
210 |
Q |
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| T |
28922458 |
gtggtgttttgcatgtatgttttcacaatgcaaattgcatgattttcattgtcgtgctagtcgtgtggtaaagggcgtcgtgctacatagcaccgc |
28922363 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 176; Significance: 8e-95; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 176; E-Value: 8e-95
Query Start/End: Original strand, 15 - 210
Target Start/End: Original strand, 21107437 - 21107632
Alignment:
| Q |
15 |
gactaaagatagtatttatttatcttattttattactataatgctttagaatttgtattatgatgaatacaagtgtgtgtagaccgttgttatggagtct |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| |
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| T |
21107437 |
gactaaagatagtatttatttatcttattttattactataatgctttagaatttgtatcatgatgaatacaagtgtgtgtagaccgttgttgtggagtct |
21107536 |
T |
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| Q |
115 |
gtggcgttttgcatgtatgttttcacaatgcaaattgcatgattttcattgtcgtgctagtcgtgtggtaaagggcgtcgtgctacatagcaccgc |
210 |
Q |
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| T |
21107537 |
gtggcgttttacatgtatattttcacaatgcaaattgcatgattttcattgtcgtgctagtcatgtggtaaagggcgtcgtgctacatagcaccgc |
21107632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 19 - 210
Target Start/End: Original strand, 21104298 - 21104489
Alignment:
| Q |
19 |
aaagatagtatttatttatcttattttattactataatgctttagaatttgtattatgatgaatacaagtgtgtgtagaccgttgttatggagtctgtgg |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
21104298 |
aaagatagtatttatttatcttattttattactataatgctttagaatttgtatcatgatgaatacaagtgtgtgtagaccgttgttgtggagtctgtgg |
21104397 |
T |
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| Q |
119 |
cgttttgcatgtatgttttcacaatgcaaattgcatgattttcattgtcgtgctagtcgtgtggtaaagggcgtcgtgctacatagcaccgc |
210 |
Q |
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|||||||||||||| |||||||| |||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||| |
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| T |
21104398 |
cgttttgcatgtatattttcacagtgcaaattgcatgattttcattgtcgtgctagtcatgtggtaaagggcgccgtgctacatagcaccgc |
21104489 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 15 - 206
Target Start/End: Original strand, 21103246 - 21103437
Alignment:
| Q |
15 |
gactaaagatagtatttatttatcttattttattactataatgctttagaatttgtattatgatgaatacaagtgtgtgtagaccgttgttatggagtct |
114 |
Q |
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|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||| |||||||| |
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| T |
21103246 |
gactaaagatggtatttatttatcttattttattactataatgctttagaatttgtatcatgatgaatacaagtgtgtgtagactgttgttgtggagtct |
21103345 |
T |
|
| Q |
115 |
gtggcgttttgcatgtatgttttcacaatgcaaattgcatgattttcattgtcgtgctagtcgtgtggtaaagggcgtcgtgctacatagca |
206 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| |
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| T |
21103346 |
gtggcgttttgcatgtatattttcacaatgcaaattgcatgattttcattgtcgtgctagtcatgtggtaaagggcgccgtgctacatagca |
21103437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 19 - 210
Target Start/End: Original strand, 21105346 - 21105537
Alignment:
| Q |
19 |
aaagatagtatttatttatcttattttattactataatgctttagaatttgtattatgatgaatacaagtgtgtgtagaccgttgttatggagtctgtgg |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
21105346 |
aaagatagtatttatttatcttattttattactataatgctttagaatttgtatcatgatgaatacaagtgtgtgtagaccgttgttgtggagtctgtgg |
21105445 |
T |
|
| Q |
119 |
cgttttgcatgtatgttttcacaatgcaaattgcatgattttcattgtcgtgctagtcgtgtggtaaagggcgtcgtgctacatagcaccgc |
210 |
Q |
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|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||| | ||||||||||||||||| |
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| T |
21105446 |
cgttttgcatgtatattttcacaatgcaaattgcatgattttcattgtcgtgctagtcatgtggtaaagggtgcagtgctacatagcaccgc |
21105537 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 19 - 210
Target Start/End: Original strand, 21106394 - 21106585
Alignment:
| Q |
19 |
aaagatagtatttatttatcttattttattactataatgctttagaatttgtattatgatgaatacaagtgtgtgtagaccgttgttatggagtctgtgg |
118 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||| |||||||||||| |
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| T |
21106394 |
aaagatagtatttacttatcttattttattactataatgctttagaatttgtatcatgatgaattcaagtgtgtgtagaccgttgttgtggagtctgtgg |
21106493 |
T |
|
| Q |
119 |
cgttttgcatgtatgttttcacaatgcaaattgcatgattttcattgtcgtgctagtcgtgtggtaaagggcgtcgtgctacatagcaccgc |
210 |
Q |
| |
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|||||||||||||| |||||||||||| |||||||||||||||||| | |||||||| |||||||||||||| |||||||||||||||||| |
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| T |
21106494 |
cgttttgcatgtatattttcacaatgcgaattgcatgattttcattaacatgctagtcatgtggtaaagggcgccgtgctacatagcaccgc |
21106585 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 169; Significance: 1e-90; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 15 - 207
Target Start/End: Original strand, 18243593 - 18243785
Alignment:
| Q |
15 |
gactaaagatagtatttatttatcttattttattactataatgctttagaatttgtattatgatgaatacaagtgtgtgtagaccgttgttatggagtct |
114 |
Q |
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|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| |
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| T |
18243593 |
gactaaagatagtatttatttatcttattttagtactataatgctttagaatttgtattatgataaatacaagtgtgtgtagaccgttgttgtggagtct |
18243692 |
T |
|
| Q |
115 |
gtggcgttttgcatgtatgttttcacaatgcaaattgcatgattttcattgtcgtgctagtcgtgtggtaaagggcgtcgtgctacatagcac |
207 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| |
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| T |
18243693 |
gtggtgttttgcatgtatgttttcacaatgcaaattgcatgattttcattgtcgtgctagtcgtgtggtaaagggcgtcctgctatatagcac |
18243785 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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