View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1798_low_32 (Length: 318)

Name: NF1798_low_32
Description: NF1798
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1798_low_32
NF1798_low_32
[»] chr5 (3 HSPs)
chr5 (145-303)||(19610683-19610842)
chr5 (3-120)||(3533824-3533941)
chr5 (147-286)||(3533964-3534087)
[»] chr6 (2 HSPs)
chr6 (161-303)||(7599457-7599600)
chr6 (3-117)||(7599311-7599424)
[»] chr4 (2 HSPs)
chr4 (161-303)||(28462922-28463065)
chr4 (3-117)||(28463098-28463211)
[»] chr2 (2 HSPs)
chr2 (145-303)||(45401539-45401692)
chr2 (3-117)||(45401400-45401513)
[»] chr3 (2 HSPs)
chr3 (236-303)||(23361209-23361276)
chr3 (145-204)||(23361152-23361212)
[»] scaffold0014 (1 HSPs)
scaffold0014 (3-50)||(89865-89913)
[»] chr1 (1 HSPs)
chr1 (185-228)||(15172294-15172338)


Alignment Details
Target: chr5 (Bit Score: 136; Significance: 6e-71; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 145 - 303
Target Start/End: Original strand, 19610683 - 19610842
Alignment:
Q  145 accaaaaatctcaccgatcaaaatgaatcgac-acaacaatcaatcaccaccgtcgccgccacatcaccaccgtcacgcatcatcgtcgtcacgcctctc 243  Q
    |||||||||||||||||||||||||||||||  ||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  19610683 accaaaaatctcaccgatcaaaatgaatcgatgacaacaatcaatcgccactgtcgccgccacatcaccaccgtcacgcatcatcgtcgtcacgcctctc 19610782  T
Q  244 agaattcagttttcttttctcgaccacaaacaacaaatcgatcgcagaagcagagctatt 303  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  19610783 agaattcagttttcttttctcgaccacaaacaacaaatcgatcacagaagcagagctatt 19610842  T

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Target: chr5; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 3 - 120
Target Start/End: Original strand, 3533824 - 3533941
Alignment:
Q  3 cacacataatttattttcagttttaagagcacccataaaataaaatgttactctatatttctttttgaacaaatnnnnnnnggaaaatgttaccaacact 102  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||       |||||||||||||||||||    
T  3533824 cacacataatttattttcagttttaagagcacccataaaataaaatgttactctatatttcttttttaacaaataaaaaaaggaaaatgttaccaacact 3533923  T
Q  103 tcagtggataactcataa 120  Q
    ||||||||||||||||||    
T  3533924 tcagtggataactcataa 3533941  T

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Target: chr5; HSP #3
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 147 - 286
Target Start/End: Original strand, 3533964 - 3534087
Alignment:
Q  147 caaaaatctcaccgatcaaaatgaatcgacacaacaatcaatcaccaccgtcgccgccacatcaccaccgtcacgcatcatcgtcgtcacgcctctcaga 246  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||                 ||||||||    
T  3533964 caaaaatctcaccgatcaaaatgaatcaacacaacaatcaatcaccaccgtcgccgccacatcaccaccgtcacgt----------------ctctcaga 3534047  T
Q  247 attcagttttcttttctcgaccacaaacaacaaatcgatc 286  Q
     |||||||||||||||||||||||||||||| ||||||||    
T  3534048 gttcagttttcttttctcgaccacaaacaactaatcgatc 3534087  T

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Target: chr6 (Bit Score: 116; Significance: 5e-59; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 161 - 303
Target Start/End: Original strand, 7599457 - 7599600
Alignment:
Q  161 atcaaaatgaatcgaca-caacaatcaatcaccaccgtcgccgccacatcaccaccgtcacgcatcatcgtcgtcacgcctctcagaattcagttttctt 259  Q
    ||||||||||||||||| |||||||||||| ||||||||||| |||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||    
T  7599457 atcaaaatgaatcgacaacaacaatcaatcgccaccgtcgccaccacatcaccaccgtcactcatcatcgtcgccacgcctctcagaattcagttttctt 7599556  T
Q  260 ttctcgaccacaaacaacaaatcgatcgcagaagcagagctatt 303  Q
    ||||||||||||||||||||||||||| ||||||||||||||||    
T  7599557 ttctcgaccacaaacaacaaatcgatcacagaagcagagctatt 7599600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 3 - 117
Target Start/End: Original strand, 7599311 - 7599424
Alignment:
Q  3 cacacataatttattttcagttttaagagcacccataaaataaaatgttactctatatttctttttgaacaaatnnnnnnnggaaaatgttaccaacact 102  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||       || ||||||||||||||||    
T  7599311 cacacataatttattttcagttttaagagcacccatcaaataaaatgttactctatatttctttttgaacaaataaaaaaaggtaaatgttaccaacact 7599410  T
Q  103 tcagtggataactca 117  Q
    ||||| |||||||||    
T  7599411 tcagt-gataactca 7599424  T

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Target: chr4 (Bit Score: 116; Significance: 5e-59; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 161 - 303
Target Start/End: Complemental strand, 28463065 - 28462922
Alignment:
Q  161 atcaaaatgaatcgaca-caacaatcaatcaccaccgtcgccgccacatcaccaccgtcacgcatcatcgtcgtcacgcctctcagaattcagttttctt 259  Q
    ||||||||||||||||| |||||||||||| ||||||||||| |||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||    
T  28463065 atcaaaatgaatcgacaacaacaatcaatcgccaccgtcgccaccacatcaccaccgtcactcatcatcgtcgccacgcctctcagaattcagttttctt 28462966  T
Q  260 ttctcgaccacaaacaacaaatcgatcgcagaagcagagctatt 303  Q
    ||||||||||||||||||||||||||| ||||||||||||||||    
T  28462965 ttctcgaccacaaacaacaaatcgatcacagaagcagagctatt 28462922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 3 - 117
Target Start/End: Complemental strand, 28463211 - 28463098
Alignment:
Q  3 cacacataatttattttcagttttaagagcacccataaaataaaatgttactctatatttctttttgaacaaatnnnnnnnggaaaatgttaccaacact 102  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||       || ||||||||||||||||    
T  28463211 cacacataatttattttcagttttaagagcacccatcaaataaaatgttactctatatttctttttgaacaaataaaaaaaggtaaatgttaccaacact 28463112  T
Q  103 tcagtggataactca 117  Q
    ||||| |||||||||    
T  28463111 tcagt-gataactca 28463098  T

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Target: chr2 (Bit Score: 113; Significance: 3e-57; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 145 - 303
Target Start/End: Original strand, 45401539 - 45401692
Alignment:
Q  145 accaaaaatctcaccgatcaaaatgaatcgac-acaacaatcaatcaccaccgtcgccgccacatcaccaccgtcacgcatcatcgtcgtcacgcctctc 243  Q
    |||||||||||||||||||||||||||||||| ||||||||||||| |||| |||||||||||||||||||||||| |||||||||||||||||||        
T  45401539 accaaaaatctcaccgatcaaaatgaatcgacgacaacaatcaatcgccacggtcgccgccacatcaccaccgtcatgcatcatcgtcgtcacgcc---- 45401634  T
Q  244 agaattcagttttcttttctcgaccacaaacaacaaatcgatcgcagaagcagagctatt 303  Q
      ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  45401635 --aattcagttttcttttctcgaccacaaacaacaaatcgatcacagaagcagagctatt 45401692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 3 - 117
Target Start/End: Original strand, 45401400 - 45401513
Alignment:
Q  3 cacacataatttattttcagttttaagagcacccataaaataaaatgttactctatatttctttttgaacaaatnnnnnnnggaaaatgttaccaacact 102  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       || ||||||||||||||||    
T  45401400 cacacataatttattttcagttttaagagcacccataaaataaaatgttactctatatttctttttgaacaaataaaacaaggtaaatgttaccaacact 45401499  T
Q  103 tcagtggataactca 117  Q
    ||||| |||||||||    
T  45401500 tcagt-gataactca 45401513  T

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Target: chr3 (Bit Score: 64; Significance: 6e-28; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 236 - 303
Target Start/End: Original strand, 23361209 - 23361276
Alignment:
Q  236 cgcctctcagaattcagttttcttttctcgaccacaaacaacaaatcgatcgcagaagcagagctatt 303  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  23361209 cgcctctcagaattcagttttcttttctcgaccacaaacaacaaatcgatcacagaagcagagctatt 23361276  T

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Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 145 - 204
Target Start/End: Original strand, 23361152 - 23361212
Alignment:
Q  145 accaaaaatctcaccgatcaaaatgaatcgac-acaacaatcaatcaccaccgtcgccgcc 204  Q
    |||||||||||||||||||||||||||||||| ||||| ||||||| ||||| ||||||||    
T  23361152 accaaaaatctcaccgatcaaaatgaatcgacgacaacgatcaatcgccaccatcgccgcc 23361212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 3 - 50
Target Start/End: Original strand, 89865 - 89913
Alignment:
Q  3 cacacataatttattttcagtttt-aagagcacccataaaataaaatgt 50  Q
    |||| ||||||||||||||||||| ||||||||||||||||||||||||    
T  89865 cacaaataatttattttcagtttttaagagcacccataaaataaaatgt 89913  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 185 - 228
Target Start/End: Complemental strand, 15172338 - 15172294
Alignment:
Q  185 caatcaccaccgtcgccgcca-catcaccaccgtcacgcatcatc 228  Q
    ||||||||||||||||||||| ||||||| |||||||| ||||||    
T  15172338 caatcaccaccgtcgccgccaccatcaccgccgtcacgaatcatc 15172294  T

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