View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1798_low_37 (Length: 279)

Name: NF1798_low_37
Description: NF1798
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1798_low_37
NF1798_low_37
[»] chr3 (13 HSPs)
chr3 (1-268)||(11496599-11496866)
chr3 (2-268)||(5966679-5966945)
chr3 (1-268)||(2920391-2920658)
chr3 (3-268)||(11490125-11490393)
chr3 (113-270)||(4079238-4079395)
chr3 (125-268)||(5052754-5052897)
chr3 (113-270)||(4059629-4059786)
chr3 (117-249)||(4130837-4130969)
chr3 (3-161)||(7490016-7490174)
chr3 (113-268)||(4114102-4114259)
chr3 (117-211)||(4091370-4091464)
chr3 (117-226)||(910730-910839)
chr3 (189-252)||(7491565-7491628)
[»] chr8 (1 HSPs)
chr8 (1-268)||(18388884-18389151)
[»] scaffold0603 (1 HSPs)
scaffold0603 (14-268)||(3822-4076)
[»] chr5 (1 HSPs)
chr5 (1-253)||(16447669-16447921)
[»] chr1 (2 HSPs)
chr1 (3-268)||(17312608-17312867)
chr1 (113-268)||(13934245-13934400)
[»] chr4 (1 HSPs)
chr4 (1-255)||(5989402-5989656)
[»] scaffold0267 (1 HSPs)
scaffold0267 (162-269)||(19559-19666)


Alignment Details
Target: chr3 (Bit Score: 248; Significance: 1e-138; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 1 - 268
Target Start/End: Original strand, 11496599 - 11496866
Alignment:
Q  1 cgggcatctcccccaatgcagtgtcactaatgtcaagacactgtagattgaccaattctcctatgtcctcgggcaattcaacgagctttctacagcctgc 100  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  11496599 cgggcatctcccccaatgcagtgtcactaatgtcaaggcactgtagattgaccaattctcctatgtcctcgggcaattcaacgagccttctacagcctgc 11496698  T
Q  101 caataacaagaactgtagattgtaaagcttgcatgtttcataaggcaatctttcaatattagtgtgagaaagatttaagtaccgcaggtataacaaattt 200  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  11496699 caataacaagaactgcagattgtaaagcttgcatgtttcataaggcaatctttcaatattagtgtgagaaagatttaagtaccggaggtataacaaattt 11496798  T
Q  201 ccaatagatttgggaacctcagtgatactcttgtagtttgacaaagacaacacacgcaactgtttcat 268  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  11496799 ccaatagatttgggaacctcggtgatactcttgtagtttgacaaagacaacacacgcaactgtttcat 11496866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 2 - 268
Target Start/End: Complemental strand, 5966945 - 5966679
Alignment:
Q  2 gggcatctcccccaatgcagtgtcactaatgtcaagacactgtagattgaccaattctcctatgtcctcgggcaattcaacgagctttctacagcctgcc 101  Q
    ||||||||||| ||||||||||||||||||||||||||   | | | | ||||||| ||| |||||||| |||||||||  |||| || ||||||||| |    
T  5966945 gggcatctccctcaatgcagtgtcactaatgtcaagacggcgcaaactaaccaattttcccatgtcctctggcaattcagtgagccttttacagcctgac 5966846  T
Q  102 aataacaagaactgtagattgtaaagcttgcatgtttcataaggcaatctttcaatattagtgtgagaaagatttaagtaccgcaggtataacaaatttc 201  Q
    || ||||||||||| ||||||||||||||||||||||||  ||||||  ||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  5966845 aacaacaagaactgcagattgtaaagcttgcatgtttcactaggcaacttttcaatcttagtgtgagaaagatttaagtaccgcaggtataacaaatttc 5966746  T
Q  202 caatagatttgggaacctcagtgatactcttgtagtttgacaaagacaacacacgcaactgtttcat 268  Q
    ||||||||||||||||||||||||| || |||||||||| |||||||||||||||||| ||||||||    
T  5966745 caatagatttgggaacctcagtgatgcttttgtagtttgtcaaagacaacacacgcaattgtttcat 5966679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 1 - 268
Target Start/End: Complemental strand, 2920658 - 2920391
Alignment:
Q  1 cgggcatctcccccaatgcagtgtcactaatgtcaagacactgtagattgaccaattctcctatgtcctcgggcaattcaacgagctttctacagcctgc 100  Q
    |||||||||||| ||||||||||||||||| ||||||      |||||| ||||||| ||| |||||||| |||||||||| || | || |||| ||||     
T  2920658 cgggcatctccctcaatgcagtgtcactaacgtcaaggtggcatagattaaccaattttcccatgtcctctggcaattcaatgaaccttttacatcctga 2920559  T
Q  101 caataacaagaactgtagattgtaaagcttgcatgtttcataaggcaatctttcaatattagtgtgagaaagatttaagtaccgcaggtataacaaattt 200  Q
    ||| ||||||||||| ||||||||||||| |||||||||| ||||||  |||||||| | ||| ||||||||||||||||||||||||||||||||||||    
T  2920558 caacaacaagaactgaagattgtaaagctggcatgtttcagaaggcagcctttcaatctcagtatgagaaagatttaagtaccgcaggtataacaaattt 2920459  T
Q  201 ccaatagatttgggaacctcagtgatactcttgtagtttgacaaagacaacacacgcaactgtttcat 268  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  2920458 ccaatagagttgggaacctcagtgatactcttgtagtttgacaaagacaacacacgtaactgtttcat 2920391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 3 - 268
Target Start/End: Original strand, 11490125 - 11490393
Alignment:
Q  3 ggcatctcccccaatgcagt---gtcactaatgtcaagacactgtagattgaccaattctcctatgtcctcgggcaattcaacgagctttctacagcctg 99  Q
    |||||||||| |||||||||   |||||||||||||||     | ||||| |||||||  || || ||||| || ||||||| |||||||||||||||||    
T  11490125 ggcatctccctcaatgcagtactgtcactaatgtcaaggtggcggagattaaccaatttccccatatcctccggaaattcaatgagctttctacagcctg 11490224  T
Q  100 ccaataacaagaactgtagattgtaaagcttgcatgtttcataaggcaatctttcaatattagtgtgagaaagatttaagtaccgcaggtataacaaatt 199  Q
    |||| ||||||||||| ||||||||||||||||||||| || ||||||| |||||||| |||||||| ||||||||||||||||||||| ||||||||||    
T  11490225 ccaacaacaagaactgcagattgtaaagcttgcatgttgcagaaggcaacctttcaatcttagtgtgggaaagatttaagtaccgcaggcataacaaatt 11490324  T
Q  200 tccaatagatttgggaacctcagtgatactcttgtagtttgacaaagacaacacacgcaactgtttcat 268  Q
    | ||||||| ||||||| ||| ||||||||| ||||||||||||| ||||| ||||| || ||||||||    
T  11490325 ttcaatagagttgggaatctcggtgatactcctgtagtttgacaaggacaaaacacgtaattgtttcat 11490393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 113 - 270
Target Start/End: Original strand, 4079238 - 4079395
Alignment:
Q  113 ctgtagattgtaaagcttgcatgtttcataaggcaatctttcaatattagtgtgagaaagatttaagtaccgcaggtataacaaatttccaatagatttg 212  Q
    |||||||||||||||||||||||||||| ||||||| ||||||||| |||||||||| | ||||||||| |||||||||| ||||||||||||||| |||    
T  4079238 ctgtagattgtaaagcttgcatgtttcagaaggcaacctttcaatactagtgtgagagacatttaagtatcgcaggtatatcaaatttccaatagagttg 4079337  T
Q  213 ggaacctcagtgatactcttgtagtttgacaaagacaacacacgcaactgtttcatct 270  Q
    || | |||||||||| | | ||||||||||| |||||||||| | |||||||||||||    
T  4079338 ggcaactcagtgatattatggtagtttgacagagacaacacatgtaactgtttcatct 4079395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 125 - 268
Target Start/End: Complemental strand, 5052897 - 5052754
Alignment:
Q  125 aagcttgcatgtttcataaggcaatctttcaatattagtgtgagaaagatttaagtaccgcaggtataacaaatttccaatagatttgggaacctcagtg 224  Q
    ||||||||||||| || ||||||| |||||||| |||||||| |||||||||||||||| |||||||||||||||| ||||||| ||||||||||| |||    
T  5052897 aagcttgcatgttgcagaaggcaacctttcaatcttagtgtgggaaagatttaagtacctcaggtataacaaattttcaatagagttgggaacctcggtg 5052798  T
Q  225 atactcttgtagtttgacaaagacaacacacgcaactgtttcat 268  Q
    |||||| |||||||||||||||||||||| || || ||||||||    
T  5052797 atactcctgtagtttgacaaagacaacacgcgtaattgtttcat 5052754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 113 - 270
Target Start/End: Original strand, 4059629 - 4059786
Alignment:
Q  113 ctgtagattgtaaagcttgcatgtttcataaggcaatctttcaatattagtgtgagaaagatttaagtaccgcaggtataacaaatttccaatagatttg 212  Q
    |||||||||||||||||||||||||||| ||||||| ||||||||| |||||||||| | ||||||||| |||||||||| ||||||||||||||| |||    
T  4059629 ctgtagattgtaaagcttgcatgtttcagaaggcaacctttcaatactagtgtgagagacatttaagtatcgcaggtatatcaaatttccaatagagttg 4059728  T
Q  213 ggaacctcagtgatactcttgtagtttgacaaagacaacacacgcaactgtttcatct 270  Q
    || | | |||||||| | | ||||||||||| |||||||||| | |||||||||||||    
T  4059729 ggcaacgcagtgatattatggtagtttgacagagacaacacatgtaactgtttcatct 4059786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 117 - 249
Target Start/End: Complemental strand, 4130969 - 4130837
Alignment:
Q  117 agattgtaaagcttgcatgtttcataaggcaatctttcaatattagtgtgagaaagatttaagtaccgcaggtataacaaatttccaatagatttgggaa 216  Q
    ||||||||||||||||||||||||   |||||  ||  ||| | ||||||||| ||||||||||| |||||||||| ||||||||||||||| |||||||    
T  4130969 agattgtaaagcttgcatgtttcagcgggcaacattctaatctcagtgtgagagagatttaagtatcgcaggtatatcaaatttccaatagaattgggaa 4130870  T
Q  217 cctcagtgatactcttgtagtttgacaaagaca 249  Q
     |||||||||| |||||||||||||||||||||    
T  4130869 actcagtgatattcttgtagtttgacaaagaca 4130837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 3 - 161
Target Start/End: Original strand, 7490016 - 7490174
Alignment:
Q  3 ggcatctcccccaatgcagtgtcactaatgtcaagacactgtagattgaccaattctcctatgtcctcgggcaattcaacgagctttctacagcctgcca 102  Q
    |||||||||| |||||||||||| ||||  |||||    || ||||| ||||||| ||| |||||||| || ||||||| |||| ||||||||||| |||    
T  7490016 ggcatctccctcaatgcagtgtcgctaacatcaaggtgatgcagattaaccaattttccaatgtcctccggaaattcaatgagccttctacagcctacca 7490115  T
Q  103 ataacaagaactgtagattgtaaagcttgcatgtttcataaggcaatctttcaatatta 161  Q
    | || |||||||| |||||||||||||||||||||||| ||||||| ||||||||||||    
T  7490116 acaataagaactgcagattgtaaagcttgcatgtttcagaaggcaacctttcaatatta 7490174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 113 - 268
Target Start/End: Original strand, 4114102 - 4114259
Alignment:
Q  113 ctgtagattgtaaagcttgcatgtttcataaggcaatctttcaatattagtgtgagaaagatttaagtaccgcaggtataacaaatttccaatagatttg 212  Q
    |||||||||| ||||||||||||||||| ||||||| |||| |||| ||||| |||| | ||||||||| |||||||||| ||||||||||||||| |||    
T  4114102 ctgtagattgcaaagcttgcatgtttcagaaggcaacctttgaatactagtgcgagagacatttaagtatcgcaggtatatcaaatttccaatagagttg 4114201  T
Q  213 ggaacctcagtgatactc--ttgtagtttgacaaagacaacacacgcaactgtttcat 268  Q
    || | || ||||||| ||   |||| ||||| | |||||||||||| |||||||||||    
T  4114202 ggcaacttagtgatattcctgtgtaatttgatagagacaacacacgtaactgtttcat 4114259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 117 - 211
Target Start/End: Original strand, 4091370 - 4091464
Alignment:
Q  117 agattgtaaagcttgcatgtttcataaggcaatctttcaatattagtgtgagaaagatttaagtaccgcaggtataacaaatttccaatagattt 211  Q
    |||||||||||||||||||||||| | ||||| ||| ||||  |||||| ||| ||||||||||| || ||||||| |||| |||||||||||||    
T  4091370 agattgtaaagcttgcatgtttcagagggcaaccttccaatcatagtgtcagagagatttaagtatcgtaggtatatcaaacttccaatagattt 4091464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 117 - 226
Target Start/End: Original strand, 910730 - 910839
Alignment:
Q  117 agattgtaaagcttgcatgtttcataaggcaatctttcaatattagtgtgagaaagatttaagtaccgcaggtataacaaatttccaatagatttgggaa 216  Q
    ||||| ||||||||||||||| || ||||||| ||||||||   ||||| ||| ||||| ||||| |||||||||| |||||| |||||||||| ||| |    
T  910730 agattttaaagcttgcatgttgcagaaggcaacctttcaatcccagtgtaagagagattcaagtatcgcaggtatatcaaattcccaatagattcgggca 910829  T
Q  217 cctcagtgat 226  Q
     |||||||||    
T  910830 actcagtgat 910839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 189 - 252
Target Start/End: Original strand, 7491565 - 7491628
Alignment:
Q  189 tataacaaatttccaatagatttgggaacctcagtgatactcttgtagtttgacaaagacaaca 252  Q
    |||||||||||||||||||| ||| ||||||| |||||||| |||||||||||||| |||||||    
T  7491565 tataacaaatttccaatagagttgcgaacctcggtgatacttttgtagtttgacaatgacaaca 7491628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 128; Significance: 3e-66; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 1 - 268
Target Start/End: Complemental strand, 18389151 - 18388884
Alignment:
Q  1 cgggcatctcccccaatgcagtgtcactaatgtcaagacactgtagattgaccaattctcctatgtcctcgggcaattcaacgagctttctacagcctgc 100  Q
    |||||||||| | || |||||||||||||| ||||||     ||||||||||||||| ||| |||||||  |||||||||  || | || |||||||||     
T  18389151 cgggcatctcactcagtgcagtgtcactaacgtcaaggtgacgtagattgaccaattttccaatgtcctgtggcaattcagtgaaccttttacagcctga 18389052  T
Q  101 caataacaagaactgtagattgtaaagcttgcatgtttcataaggcaatctttcaatattagtgtgagaaagatttaagtaccgcaggtataacaaattt 200  Q
    ||| | ||||||||| |||||||||||||||||||||||| ||||||| |||||||| ||||| ||||||||||| ||||| ||||||| ||||||||||    
T  18389051 caacagcaagaactgcagattgtaaagcttgcatgtttcagaaggcaacctttcaatcttagtatgagaaagattcaagtagcgcaggtgtaacaaattt 18388952  T
Q  201 ccaatagatttgggaacctcagtgatactcttgtagtttgacaaagacaacacacgcaactgtttcat 268  Q
    ||||| | ||||||||||||||||||||||||||||||||||||||||| ||  || |||||||||||    
T  18388951 ccaattgttttgggaacctcagtgatactcttgtagtttgacaaagacagcatgcgtaactgtttcat 18388884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0603 (Bit Score: 127; Significance: 1e-65; HSPs: 1)
Name: scaffold0603
Description:

Target: scaffold0603; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 14 - 268
Target Start/End: Original strand, 3822 - 4076
Alignment:
Q  14 caatgcagtgtcactaatgtcaagacactgtagattgaccaattctcctatgtcctcgggcaattcaacgagctttctacagcctgccaataacaagaac 113  Q
    ||||||||||||||||| ||||||      |||||| ||||||| ||| |||||||| |||||||||  ||||||| ||||||||| |||||||||||||    
T  3822 caatgcagtgtcactaacgtcaaggtggcatagattaaccaattttccaatgtcctctggcaattcagtgagctttttacagcctgacaataacaagaac 3921  T
Q  114 tgtagattgtaaagcttgcatgtttcataaggcaatctttcaatattagtgtgagaaagatttaagtaccgcaggtataacaaatttccaatagatttgg 213  Q
    || ||||||||||||| ||| |||||| ||||||| ||||||||  ||||||| ||||||||||||||| | |||| |||||||||| ||||||| ||||    
T  3922 tgcagattgtaaagctcgcaagtttcagaaggcaacctttcaatcatagtgtgggaaagatttaagtactgaaggtgtaacaaatttgcaatagagttgg 4021  T
Q  214 gaacctcagtgatactcttgtagtttgacaaagacaacacacgcaactgtttcat 268  Q
    |||||||||||||||||||||| ||||||||||||||||| || || ||||||||    
T  4022 gaacctcagtgatactcttgtaatttgacaaagacaacacgcgtaattgtttcat 4076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 125; Significance: 2e-64; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 1 - 253
Target Start/End: Complemental strand, 16447921 - 16447669
Alignment:
Q  1 cgggcatctcccccaatgcagtgtcactaatgtcaagacactgtagattgaccaattctcctatgtcctcgggcaattcaacgagctttctacagcctgc 100  Q
    |||||||||||| |||||||||||||||||||| |||     ||||||| || |||| ||| ||||| || |||||||||  |||| || |||||||||     
T  16447921 cgggcatctccctcaatgcagtgtcactaatgttaaggtggagtagattaactaattttcccatgtcttccggcaattcagtgagccttttacagcctga 16447822  T
Q  101 caataacaagaactgtagattgtaaagcttgcatgtttcataaggcaatctttcaatattagtgtgagaaagatttaagtaccgcaggtataacaaattt 200  Q
    ||| |||||||||||||||||||||||||||||||||| | ||||||| |||||||| |  |||||||||||||||| |||||||||||||| |||| ||    
T  16447821 caacaacaagaactgtagattgtaaagcttgcatgttttagaaggcaacctttcaatctgtgtgtgagaaagatttaggtaccgcaggtatatcaaactt 16447722  T
Q  201 ccaatagatttgggaacctcagtgatactcttgtagtttgacaaagacaacac 253  Q
    |||||||| ||||||||||||||||||||  |||||||||||||||| |||||    
T  16447721 ccaatagagttgggaacctcagtgatacttctgtagtttgacaaagataacac 16447669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 119; Significance: 7e-61; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 3 - 268
Target Start/End: Complemental strand, 17312867 - 17312608
Alignment:
Q  3 ggcatctcccccaatgcagtgtcactaatgtcaagacactgtagattgaccaattctcctatgtcctcgggcaattcaacgagctttctacagcctgcca 102  Q
    |||||| ||| |||||||||||||||||| ||||| ||    ||||||||||||||||||||||  || |||||||||| |||| || |||| |||||||    
T  17312867 ggcatccccctcaatgcagtgtcactaatttcaaggcagcacagattgaccaattctcctatgtggtctggcaattcaatgagccttgtacaacctgcca 17312768  T
Q  103 ataacaagaactgtagattgtaaagcttgcatgtttcataaggcaatctttcaatattagtgtgagaaagatttaagtaccgcaggtataacaaatttcc 202  Q
    |      |||||| |||||||||||||||||||||||| ||||||| ||| |||| ||||||||||||| |||||||||||||||| | ||||| |||||    
T  17312767 a------gaactgcagattgtaaagcttgcatgtttcagaaggcaaccttccaatcttagtgtgagaaacatttaagtaccgcaggaaaaacaattttcc 17312674  T
Q  203 aatagatttgggaacctcagtgatactcttgtagtttgacaaagacaacacacgcaactgtttcat 268  Q
    |||||| || ||||||| | ||||||||||||||||||||||||||||| |||| || ||||||||    
T  17312673 aatagacttcggaaccttaatgatactcttgtagtttgacaaagacaacgcacgtaattgtttcat 17312608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 113 - 268
Target Start/End: Complemental strand, 13934400 - 13934245
Alignment:
Q  113 ctgtagattgtaaagcttgcatgtttcataaggcaatctttcaatattagtgtgagaaagatttaagtaccgcaggtataacaaatttccaatagatttg 212  Q
    |||||||||||||||||||||||||||| ||||||| |||  |||   |||| |||| ||||||||||| ||||||||||  |||||||||||||| |||    
T  13934400 ctgtagattgtaaagcttgcatgtttcagaaggcaaccttctaatcccagtgcgagagagatttaagtatcgcaggtatattaaatttccaatagagttg 13934301  T
Q  213 ggaacctcagtgatactcttgtagtttgacaaagacaacacacgcaactgtttcat 268  Q
    || | || ||||||| ||||||| ||||| | |||||||||| | |||||||||||    
T  13934300 ggcaacttagtgatattcttgtaatttgatagagacaacacatgtaactgtttcat 13934245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 111; Significance: 4e-56; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 1 - 255
Target Start/End: Complemental strand, 5989656 - 5989402
Alignment:
Q  1 cgggcatctcccccaatgcagtgtcactaatgtcaagacactgtagattgaccaattctcctatgtcctcgggcaattcaacgagctttctacagcctgc 100  Q
    |||||||||||  ||||||||||||| ||| ||||||     | | ||||||||||| ||| |||||||| || || |||| |||| || |||||||       
T  5989656 cgggcatctccgtcaatgcagtgtcattaacgtcaaggtggcgcaaattgaccaattttcccatgtcctccggtaactcaatgagccttttacagcccaa 5989557  T
Q  101 caataacaagaactgtagattgtaaagcttgcatgtttcataaggcaatctttcaatattagtgtgagaaagatttaagtaccgcaggtataacaaattt 200  Q
    ||| |||||||| || ||||||||||| |||||||||||| ||||||| ||||||||||| |||||||||||||| |||||| ||| ||||| |||||||    
T  5989556 caacaacaagaattgaagattgtaaagattgcatgtttcagaaggcaacctttcaatatttgtgtgagaaagattaaagtactgcaagtataccaaattt 5989457  T
Q  201 ccaatagatttgggaacctcagtgatactcttgtagtttgacaaagacaacacac 255  Q
    |||||||| |||||||||| ||||||||||||||||||||||||||| |||||||    
T  5989456 ccaatagacttgggaaccttagtgatactcttgtagtttgacaaagataacacac 5989402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0267 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0267
Description:

Target: scaffold0267; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 162 - 269
Target Start/End: Complemental strand, 19666 - 19559
Alignment:
Q  162 gtgtgagaaagatttaagtaccgcaggtataacaaatttccaatagatttgggaacctcagtgatactcttgtagtttgacaaagacaacacacgcaact 261  Q
    |||| ||| ||||||||||| |||||  ||| ||||||||||||||| ||||| | ||| ||||||||| ||||||||||||| |||| ||| || || |    
T  19666 gtgttagagagatttaagtatcgcagacatatcaaatttccaatagaattgggcaactcggtgatactcctgtagtttgacaacgacagcacgcgtaatt 19567  T
Q  262 gtttcatc 269  Q
    ||||||||    
T  19566 gtttcatc 19559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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