View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1798_low_44 (Length: 250)
Name: NF1798_low_44
Description: NF1798
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1798_low_44 |
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Alignment Details
Target: chr3 (Bit Score: 238; Significance: 1e-132; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 24653543 - 24653302
Alignment:
| Q |
1 |
tataggtccgaaagaaagagaggaatgttaaatgtaggaagaacatgagatgtggttctgtaagcacttgagagaatacaagtcctggttctcaggatca |
100 |
Q |
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| T |
24653543 |
tataggtccgaaagaaagagaggaatgttaaatgtaggaagaacatgagatgtggttctgtaagcacttgagagaatacaagtcctggttctcaggatca |
24653444 |
T |
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| Q |
101 |
gaccttaagcaattgttgttcagataatgaatccaattcttttcaagagcatcgtgtagcggcattttcaagtttgagccagaaaatttctacagctatg |
200 |
Q |
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| T |
24653443 |
gaccttaagcaattgttgttcagataatgaatccaattcttttcaagagcatcgtgtagcggcattttcaagtttgagccagaaaatttctacagctatg |
24653344 |
T |
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| Q |
201 |
aacttaagtggcaaatcaagatctagtagtggtccctatgct |
242 |
Q |
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| T |
24653343 |
aacttaagtggcaaatcaagatctagtagtggtccctctgct |
24653302 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 24682527 - 24682419
Alignment:
| Q |
1 |
tataggtccgaaagaaagagaggaat---gttaaatgtaggaagaacatgagatgtggttctgtaagcacttgagagaatacaagtcctggttctcagga |
97 |
Q |
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| T |
24682527 |
tataggtccgaaagaaagagaggaataatgttaaatgtaggaagaacatgagatgtggttctgtaagcacttaagagaatacaagtgctggttctcagga |
24682428 |
T |
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| Q |
98 |
tcagacctt |
106 |
Q |
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| T |
24682427 |
tcagacctt |
24682419 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 24685268 - 24685158
Alignment:
| Q |
1 |
tataggtccgaaagaaagagaggaatgttaaatgtaggaagaacatgagatgtggttctgtaagcacttgagagaatacaagtcctggttctcaggatca |
100 |
Q |
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||||||||| ||||| |||||||||||||||| | |||||| ||||||||||||| | ||||||| |||||||||| ||||||||||||| ||||| |
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| T |
24685268 |
tataggtccccaagaacaagaggaatgttaaatgcatgaagaatatgagatgtggttttataagcacagaagagaatacaggtcctggttctcaagatca |
24685169 |
T |
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| Q |
101 |
gaccttaagca |
111 |
Q |
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||||||||||| |
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| T |
24685168 |
gaccttaagca |
24685158 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 28 - 109
Target Start/End: Complemental strand, 24631841 - 24631760
Alignment:
| Q |
28 |
ttaaatgtaggaagaacatgagatgtggttctgtaagcacttgagagaatacaagtcctggttctcaggatcagaccttaag |
109 |
Q |
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| T |
24631841 |
ttaaatgtatgaagaatatgagatttggttctataatcacaaaagaaaatacaagtcctggttcgccggatcagaccttaag |
24631760 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 162 - 235
Target Start/End: Complemental strand, 24685136 - 24685063
Alignment:
| Q |
162 |
gcattttcaagtttgagccagaaaatttctacagctatgaacttaagtggcaaatcaagatctagtagtggtcc |
235 |
Q |
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| T |
24685136 |
gcatcttcaagtttgagtcagaacaattctacagctctgaagttaagcggccaatcaatatctagtagaggtcc |
24685063 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 77; Significance: 8e-36; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 278613 - 278844
Alignment:
| Q |
1 |
tataggtccgaaagaaagagaggaatgttaaatgtaggaagaacatgagatgtggttctgtaagcacttgagagaatacaagtcctggttctcaggatca |
100 |
Q |
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||||||||| |||||| |||||||||||||||||||||||| || || |||| |||| |||||||| ||||||||||||| |||||||||||||||| |
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| T |
278613 |
tataggtcccaaagaacaagaggaatgttaaatgtaggaagatgattaggtgtgcttctataagcactgaagagaatacaagtactggttctcaggatca |
278712 |
T |
|
| Q |
101 |
gaccttaagcaattgttgttcagataatgaatccaattcttttcaagagcatcgtgtagcggcattttcaagtttgagccagaaaatttctacagctatg |
200 |
Q |
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| T |
278713 |
gaccttaagcggttattgttcagaggatgagtccaattcttctcatgagccacgtggaagggaatcttctagtttgagcctgaatgattctgcagct--- |
278809 |
T |
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| Q |
201 |
aacttaagtggcaaatcaagatctagtagtggtcc |
235 |
Q |
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| T |
278810 |
aaattaagtggaaaatcaagatctagtagaggtcc |
278844 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 46 - 104
Target Start/End: Complemental strand, 41800036 - 41799978
Alignment:
| Q |
46 |
tgagatgtggttctgtaagcacttgagagaatacaagtcctggttctcaggatcagacc |
104 |
Q |
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| T |
41800036 |
tgagatgtgcttctataagcactgaagaaaatacaagtcctggttctcaggatcagacc |
41799978 |
T |
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