View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1798_low_46 (Length: 249)
Name: NF1798_low_46
Description: NF1798
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1798_low_46 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 249
Target Start/End: Complemental strand, 32689146 - 32688890
Alignment:
| Q |
1 |
aagaatcatagatatagataaggcgcagaggcatgtgaaggcagaccgtgcttaagaatttattcaccgaaga--------caaacatttccagaattcg |
92 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
32689146 |
aagaatcatagatatagataaggcgcagaggcatgtgaaggcagaccgtgcttaagaatttattcaccgaagagtcgaagacaaacatttccagaattca |
32689047 |
T |
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| Q |
93 |
acaggctccacgaagaataatctcaagtaacataactacggaaaatccttgtggttaactcatacagaaaatgcttgttttaataggtaagtaggtgggg |
192 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32689046 |
acaggctccacgaagaataatctcaagtaacataactacggaaaatccttgtggttaactcatacagaaaatgcttgttttaataggtaagtaggtgggg |
32688947 |
T |
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| Q |
193 |
tttaaatagagagaattttatattcttcagttagtgatgtgggaattcatgatttta |
249 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32688946 |
tttaaatagagagaattttatattcttcagttagtgatgtgggaattcatgatttta |
32688890 |
T |
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