View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1798_low_47 (Length: 249)
Name: NF1798_low_47
Description: NF1798
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1798_low_47 |
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| [»] scaffold0032 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 17 - 247
Target Start/End: Complemental strand, 14660514 - 14660284
Alignment:
| Q |
17 |
ttcgtgatcaaatggtattaattttcactctgaatattttgcagttgttaaaaatggcctatgcaagaaacgttgcttcaaattgttacctgaactaact |
116 |
Q |
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| T |
14660514 |
ttcgtgatcaaatggtattaatttgcactctggatattttgcagttgttaaaaatggcctatgcaagaaacgttgcttcaaattgttacctgaactaatt |
14660415 |
T |
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| Q |
117 |
gatgttgttgatagcattgaggtggacaacataattgaacctgtaagcgacatggatggcgtttgtgcagattgggaatgtctcaagagaaatcataaag |
216 |
Q |
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| T |
14660414 |
gacgttgttgatagcattgaggttgacaacataattgaacctgtaagtgacatggatggcgtttgtgcagattgggagtgtctcaagagaaatcataaag |
14660315 |
T |
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| Q |
217 |
tctatgctgcactggcttttcatctctctcg |
247 |
Q |
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| T |
14660314 |
tctatgctgcactggcttttcatctcgctcg |
14660284 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 17 - 247
Target Start/End: Complemental strand, 14670908 - 14670678
Alignment:
| Q |
17 |
ttcgtgatcaaatggtattaattttcactctgaatattttgcagttgttaaaaatggcctatgcaagaaacgttgcttcaaattgttacctgaactaact |
116 |
Q |
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|||||| ||||||||||||||||| |||||| |||||| | ||||||||||||||||| | |||||||| |||||||||||| ||||||||||| ||||| |
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| T |
14670908 |
ttcgtgttcaaatggtattaatttgcactcttaatattctacagttgttaaaaatggcatctgcaagaagcgttgcttcaaaatgttacctgaaataact |
14670809 |
T |
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| Q |
117 |
gatgttgttgatagcattgaggtggacaacataattgaacctgtaagcgacatggatggcgtttgtgcagattgggaatgtctcaagagaaatcataaag |
216 |
Q |
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| T |
14670808 |
gatgttgttgatagcattgaggtggacaacataactgaacctataagcgacatgcttgacgtttgtgaagattgggagcgtctcaagagaaatcataaag |
14670709 |
T |
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| Q |
217 |
tctatgctgcactggcttttcatctctctcg |
247 |
Q |
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| T |
14670708 |
tcgatgttgtactggcttctcatctcgctcg |
14670678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0032 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: scaffold0032
Description:
Target: scaffold0032; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 28 - 170
Target Start/End: Original strand, 42222 - 42364
Alignment:
| Q |
28 |
atggtattaattttcactctgaatattttgcagttgttaaaaatggcctatgcaagaaacgttgcttcaaattgttacctgaactaactgatgttgttga |
127 |
Q |
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| T |
42222 |
atggtattaatctgcactctaaatgttttgcagttattgaaaatggcctctgcacgcaactttgattcaaaatgtgtcctgaaatatctgatgttgttca |
42321 |
T |
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| Q |
128 |
tagcattgaggtggacaacataattgaacctgtaagcgacatg |
170 |
Q |
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| T |
42322 |
tagcattgaggtggactacatgattgaacttgttagcaacatg |
42364 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 24 - 215
Target Start/End: Complemental strand, 16888494 - 16888303
Alignment:
| Q |
24 |
tcaaatggtattaattttcactctgaatattttgcagttgttaaaaatggcctatgcaagaaacgttgcttcaaattgttacctgaactaactgatgttg |
123 |
Q |
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||||| ||||||||| | |||||| | ||||||||||| || |||| ||||| | ||| ||| |||| | ||| |||| |||||| || || |||||| |
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| T |
16888494 |
tcaaacggtattaatatgcactctaattattttgcagtaattgaaaacggcctttacaatcaactttgcattaaaatgtttcctgaaatatcttatgttg |
16888395 |
T |
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| Q |
124 |
ttgatagcattgaggtggacaacataattgaacctgtaagcgacatggatggcgtttgtgcagattgggaatgtctcaagagaaatcataaa |
215 |
Q |
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| T |
16888394 |
ttcatagcattgtggtggacatcatgattgaatctgtaagcaacatgtttgacagttatacaaattgggagtgtcttaaaagaaatcataaa |
16888303 |
T |
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