View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1798_low_56 (Length: 237)
Name: NF1798_low_56
Description: NF1798
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1798_low_56 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 17 - 237
Target Start/End: Complemental strand, 41689240 - 41689020
Alignment:
| Q |
17 |
atgtatattagctctcaacatagtttcagtctatacaacctttctatcaggtttatatccaaaaattctccaaaatcttcatcgcttgattgcgtgcatt |
116 |
Q |
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| T |
41689240 |
atgtatattagctctcaacgtagtttcagtctatacaacctttctatcaggtttatatccaaaaattctccaaaatcttcatcgcttgattgcgtgcatt |
41689141 |
T |
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| Q |
117 |
gctattatggctttggctatgatcaagttaacgacaaatataaggtgctactagttgtgcacaatacgaatgattatctgaccaaaatttatacctttgg |
216 |
Q |
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| T |
41689140 |
gctattatggctttggctatgatcaagttaacgacaaatataagatgctactagttgtgcacaatacgaatgattatctgaccaaaatttatacctttgg |
41689041 |
T |
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| Q |
217 |
cgaagattcttggaaaactat |
237 |
Q |
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| T |
41689040 |
tgaagattcttggaaaactat |
41689020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 120 - 237
Target Start/End: Complemental strand, 41681848 - 41681731
Alignment:
| Q |
120 |
attatggctttggctatgatcaagttaacgacaaatataaggtgctactagttgtgcacaatacgaatgattatctgaccaaaatttatacctttggcga |
219 |
Q |
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| T |
41681848 |
attatggctttggctatgatcaagttaatgacagttatgaggtgctagtcgttgtgcgcaataacaatgattatctgaccatactttatacctttgaaga |
41681749 |
T |
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| Q |
220 |
agattcttggaaaactat |
237 |
Q |
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| T |
41681748 |
agattcttaggaaactat |
41681731 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 119 - 152
Target Start/End: Complemental strand, 45095836 - 45095803
Alignment:
| Q |
119 |
tattatggctttggctatgatcaagttaacgaca |
152 |
Q |
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| T |
45095836 |
tattatggctttggctatgatcaagttaacgaca |
45095803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 124 - 177
Target Start/End: Complemental strand, 44669062 - 44669009
Alignment:
| Q |
124 |
tggctttggctatgatcaagttaacgacaaatataaggtgctactagttgtgca |
177 |
Q |
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| T |
44669062 |
tggctttggctatgatcaagttaacgacaggtacaaggtcctagcagttgtgca |
44669009 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 124 - 177
Target Start/End: Complemental strand, 44688338 - 44688285
Alignment:
| Q |
124 |
tggctttggctatgatcaagttaacgacaaatataaggtgctactagttgtgca |
177 |
Q |
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| T |
44688338 |
tggctttggctatgatcaagttaacgacaggtacaaggtcctagcagttgtgca |
44688285 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 195 - 234
Target Start/End: Complemental strand, 43993973 - 43993934
Alignment:
| Q |
195 |
tgaccaaaatttatacctttggcgaagattcttggaaaac |
234 |
Q |
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| T |
43993973 |
tgaccaaaatttatacctttggtgaaaattcttggaaaac |
43993934 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 175
Target Start/End: Complemental strand, 43986588 - 43986536
Alignment:
| Q |
123 |
atggctttggctatgatcaagttaacgacaaatataaggtgctactagttgtg |
175 |
Q |
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| T |
43986588 |
atggttttggctatgaccaaattaacgacaagtacaaggtgctagtagttgtg |
43986536 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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