View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1798_low_57 (Length: 237)
Name: NF1798_low_57
Description: NF1798
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1798_low_57 |
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Alignment Details
Target: chr4 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 32688876 - 32688655
Alignment:
| Q |
1 |
taactaaatatccaacggaaaccagaactaacgttctcctcagttccaagttcatattttcttgattttcagttttcacttttaagcaaatgaaacctaa |
100 |
Q |
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| T |
32688876 |
taactaaatatccaacggaaaccagaactaacgttctcctcagttccaagttcatattttcttgattttcagttttcacttttaagcaaatgaaacctca |
32688777 |
T |
|
| Q |
101 |
tgttgttatgtcagtgtgtttggttctcccatgagcaattggacgcttagccaatttaattgttgagacagtaagttaacagttgcaatacctttacttt |
200 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
32688776 |
tgtcgttatgtcagtgtgtttggttctcccatgagcaattggacgcttagccaatttaattgttgagacagcaagttaacagttgcaatacctttacttt |
32688677 |
T |
|
| Q |
201 |
catctcctgcagcaatataatg |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
32688676 |
catctcctgcagcaatataatg |
32688655 |
T |
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