View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1798_low_59 (Length: 235)
Name: NF1798_low_59
Description: NF1798
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1798_low_59 |
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Alignment Details
Target: chr5 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 43002078 - 43002298
Alignment:
| Q |
1 |
ttcattttggtcagtgaatgtgtaacagtgtctggtgtaggtgtggaacatgttggtggagacatgtttgtgagtgttccaaaagctgatgccattttca |
100 |
Q |
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| T |
43002078 |
ttcattttggtcactgaatgtgtaacggtgtctggtgtaggtgtggaacatgttggtggagacatgtttgtgagtgttccaaaagctgatgccattttca |
43002177 |
T |
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| Q |
101 |
tgaaggtgatgttattgatttgaagctacttaattgcttttctagtttatttccaatatatttcatttattttgagaagaagaaaaccaagtttatgttt |
200 |
Q |
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| T |
43002178 |
tgaaggtgattttattgatttgaagctacttaattgcttttctagtttatttccaatatatttcatttattttgagaagaagaaaaccaagtttatgttt |
43002277 |
T |
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| Q |
201 |
tatgaatgcagtggatatgtc |
221 |
Q |
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| T |
43002278 |
tatgaatgcagtggatatgtc |
43002298 |
T |
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Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 35 - 108
Target Start/End: Complemental strand, 42474039 - 42473966
Alignment:
| Q |
35 |
gtgtaggtgtggaacatgttggtggagacatgtttgtgagtgttccaaaagctgatgccattttcatgaaggtg |
108 |
Q |
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||||||| || || ||||||||||||||||||||||| ||| ||||||| |||||||| |||| ||||||||| |
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| T |
42474039 |
gtgtaggagttgagcatgttggtggagacatgtttgtcagtattccaaaggctgatgctgtttttatgaaggtg |
42473966 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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