View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1798_low_6 (Length: 507)
Name: NF1798_low_6
Description: NF1798
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1798_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 457; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 457; E-Value: 0
Query Start/End: Original strand, 11 - 491
Target Start/End: Original strand, 25741522 - 25742002
Alignment:
| Q |
11 |
caaaggaacatttagcttaccagaatcattgttcttctcacctttacaaaccaaaactctatcaagagttaaaccacaaacatgtgacacaccagcaacc |
110 |
Q |
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| T |
25741522 |
caaaggaacatttagcttaccagaatcattgttcttctcacctttacaaaccaaaactttatcaagagttaaaccacaaacatgtgacacaccagcaacc |
25741621 |
T |
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| Q |
111 |
aatgttgacattgataaattcccaaactgtttctgaatctctttttcaacaccctttttaccatttacaccccaacaaaaaactttactattctccttca |
210 |
Q |
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| T |
25741622 |
aatgttgacattgataaattcccaaactgtttctgaatctctttttcaacaccctttttaccatttacaccccaacaaaaaactttactattctccttca |
25741721 |
T |
|
| Q |
211 |
atatcccacaacaaaaaccagtaccacaagtaatgcttcgaaaccgaaaattttcatcaggagaaggaaacttgaatccattagtttcaccataacctct |
310 |
Q |
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| T |
25741722 |
atatcccacaacaaaaaccagtaccacaagtaatgcttcgaaaccgaaaattttcatcaggagaaggaaacttgaatccattagtttcaccataacctct |
25741821 |
T |
|
| Q |
311 |
ccagcaccttaccacaccagagtgcaactctcttgcacaaacatgatcatcaccaacagatacatcactcaactcaacattttcactatgatacaccctt |
410 |
Q |
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||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||| |||||| ||||||||||||||||||||||||| |
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| T |
25741822 |
ccaacaccttaccacaccagagtgcaactctctagcacaaacatgatcatcaccaacagctacatcattcaactgaacattttcactatgatacaccctt |
25741921 |
T |
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| Q |
411 |
ttaggtttgagaaaagacttccgtgtccttgtgttccaacagtgtaggctgagtccattagaccggaggccgcagaagaag |
491 |
Q |
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| T |
25741922 |
ttaggtttgagaaaagacttccgtgtccttgtgttccaacagtgtaggctgagtccattagaccggaggccgcagaagaag |
25742002 |
T |
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