View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1798_low_60 (Length: 234)
Name: NF1798_low_60
Description: NF1798
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1798_low_60 |
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Alignment Details
Target: chr7 (Bit Score: 169; Significance: 9e-91; HSPs: 11)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 16 - 224
Target Start/End: Original strand, 4784072 - 4784280
Alignment:
| Q |
16 |
agctacaacgattaccaaaatctatgcctacggtgtatcgtgatgtcacgttgaatggaatcgagattttgaaaataagtgataaaaataatctctttgg |
115 |
Q |
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|||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
4784072 |
agctacaacgattaccaaaacctatgcctacggtatatcgtgatgtcacgttgaatggaattgagattttgaaaataagtgataaaaataatctctttgg |
4784171 |
T |
|
| Q |
116 |
agtgaatccaaaacccatgtctttttctcccaaggaacaggttttaccaactcaacaatggaagaaatcaacnnnnnnnntccttgctgtggttgctgtt |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
4784172 |
agtgaatccaaaacccatgtctttttctcccaaggaacaggttttaccaactcaacaatggaagaaatcaacaacaaaaatccttgctgtggttgctgtt |
4784271 |
T |
|
| Q |
216 |
tcatctctc |
224 |
Q |
| |
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|||| |||| |
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|
| T |
4784272 |
tcatgtctc |
4784280 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 16 - 224
Target Start/End: Original strand, 4816501 - 4816709
Alignment:
| Q |
16 |
agctacaacgattaccaaaatctatgcctacggtgtatcgtgatgtcacgttgaatggaatcgagattttgaaaataagtgataaaaataatctctttgg |
115 |
Q |
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||||||| |||||||||||| |||||||| |||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
4816501 |
agctacatcgattaccaaaacctatgccttcggtatatcgtgatgtcacgttgaatggaattgagattttgaaaataagtgataaaaataatctctttgg |
4816600 |
T |
|
| Q |
116 |
agtgaatccaaaacccatgtctttttctcccaaggaacaggttttaccaactcaacaatggaagaaatcaacnnnnnnnntccttgctgtggttgctgtt |
215 |
Q |
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| T |
4816601 |
agtgaatccaaaacccatgtctttttctcccaaggaacaggttttaccaactcaacaatggaagaaatcaacaacaaaaatccttgctgtggttgctgtt |
4816700 |
T |
|
| Q |
216 |
tcatctctc |
224 |
Q |
| |
|
|||| |||| |
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|
| T |
4816701 |
tcatgtctc |
4816709 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 54 - 131
Target Start/End: Complemental strand, 4863742 - 4863662
Alignment:
| Q |
54 |
cgtgatgtcacgttgaatggaatcgagattttgaaaataagtgataaaaa---taatctctttggagtgaatccaaaaccc |
131 |
Q |
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| T |
4863742 |
cgtgatgttacgttgaatggaatcgagatttttaaaataagcgataaaaataataatttctttggactgaatccaaaaccc |
4863662 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 55 - 129
Target Start/End: Original strand, 4697466 - 4697543
Alignment:
| Q |
55 |
gtgatgtcacgttgaatggaatcgagattttgaaaataagtgataaaa---ataatctctttggagtgaatccaaaac |
129 |
Q |
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|
| T |
4697466 |
gtgatgtcacattgaatggcatcgagattttgaaaataaatgataaaaatgataatctctttggatcaaatccaaaac |
4697543 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 55 - 107
Target Start/End: Complemental strand, 4672495 - 4672443
Alignment:
| Q |
55 |
gtgatgtcacgttgaatggaatcgagattttgaaaataagtgataaaaataat |
107 |
Q |
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|||||||||| || ||||||||||||||||| ||| ||||||||||||||||| |
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|
| T |
4672495 |
gtgatgtcacattaaatggaatcgagattttcaaagtaagtgataaaaataat |
4672443 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 54 - 110
Target Start/End: Original strand, 4712350 - 4712406
Alignment:
| Q |
54 |
cgtgatgtcacgttgaatggaatcgagattttgaaaataagtgataaaaataatctc |
110 |
Q |
| |
|
|||||||||| |||||||||| |||||||| |||||||||||||||||||||||| |
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|
| T |
4712350 |
cgtgatgtcataatgaatggaattgagattttcaaaataagtgataaaaataatctc |
4712406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 51 - 109
Target Start/End: Complemental strand, 4630750 - 4630692
Alignment:
| Q |
51 |
tatcgtgatgtcacgttgaatggaatcgagattttgaaaataagtgataaaaataatct |
109 |
Q |
| |
|
|||||||||||| | |||||||||| |||||||| |||||||||||||||| |||||| |
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|
| T |
4630750 |
tatcgtgatgtcctgctgaatggaattgagattttcaaaataagtgataaaactaatct |
4630692 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 16 - 106
Target Start/End: Complemental strand, 4636721 - 4636631
Alignment:
| Q |
16 |
agctacaacgattaccaaaatctatgcctacggtgtatcgtgatgtcacgttgaatggaatcgagattttgaaaataagtgataaaaataa |
106 |
Q |
| |
|
|||| |||||||||||| || | |||||||| || ||||||||||| | | ||||||||||||||||| ||||| ||||||||| |||| |
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| T |
4636721 |
agcttcaacgattaccacaacccatgcctacagtatatcgtgatgttattcttaatggaatcgagattttcaaaattagtgataaatataa |
4636631 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 66 - 106
Target Start/End: Complemental strand, 4643494 - 4643454
Alignment:
| Q |
66 |
ttgaatggaatcgagattttgaaaataagtgataaaaataa |
106 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| |||||||| |
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|
| T |
4643494 |
ttgaatggaatcgagattttaaaaataagtgacaaaaataa |
4643454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 66 - 109
Target Start/End: Original strand, 4846299 - 4846342
Alignment:
| Q |
66 |
ttgaatggaatcgagattttgaaaataagtgataaaaataatct |
109 |
Q |
| |
|
|||||||||||||||||||| ||| ||||||||||||| ||||| |
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|
| T |
4846299 |
ttgaatggaatcgagattttcaaagtaagtgataaaaacaatct |
4846342 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 69 - 106
Target Start/End: Complemental strand, 4666740 - 4666703
Alignment:
| Q |
69 |
aatggaatcgagattttgaaaataagtgataaaaataa |
106 |
Q |
| |
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||||||||||||||||| ||||||||||| |||||||| |
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|
| T |
4666740 |
aatggaatcgagattttaaaaataagtgacaaaaataa |
4666703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 58 - 106
Target Start/End: Original strand, 18926021 - 18926069
Alignment:
| Q |
58 |
atgtcacgttgaatggaatcgagattttgaaaataagtgataaaaataa |
106 |
Q |
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||||||| |||||||| ||||||||||||||||||||||| |||||||| |
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|
| T |
18926021 |
atgtcacattgaatgggatcgagattttgaaaataagtgacaaaaataa |
18926069 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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