View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1798_low_62 (Length: 224)
Name: NF1798_low_62
Description: NF1798
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1798_low_62 |
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Alignment Details
Target: chr3 (Bit Score: 194; Significance: 1e-105; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 14 - 207
Target Start/End: Original strand, 24653572 - 24653765
Alignment:
| Q |
14 |
aaaatcaaacacacacaataaactgtgcaggaaaaaagtaaatgcatatcatatggaaaaagaaacagtagtaagtgaaatatttagaagattcatggat |
113 |
Q |
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| T |
24653572 |
aaaatcaaacacacacaataaactgtgcaggaaaaaagtaaatgcatatcatatggaaaaagaaacagtagtaagtgaaatatttagaagattcatggat |
24653671 |
T |
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| Q |
114 |
tgtattatatgaaatatcagaccctaaataattttttatacaaacatctagagtatgttctggagaaagctaaaagtctgtttgatgtcaatat |
207 |
Q |
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| T |
24653672 |
tgtattatatgaaatatcagaccctaaataattttttatacaaacatctagagtatgttctggagaaagctaaaagtctgtttgatgtcaatat |
24653765 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 73 - 106
Target Start/End: Original strand, 24631952 - 24631985
Alignment:
| Q |
73 |
aagaaacagtagtaagtgaaatatttagaagatt |
106 |
Q |
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| T |
24631952 |
aagaaacattagtaagtgaaatatttagaagatt |
24631985 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 65
Target Start/End: Original strand, 24682554 - 24682603
Alignment:
| Q |
14 |
aaaatcaaacacacacaataaactgtgcaggaaaaaagtaaatgcatatcat |
65 |
Q |
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| T |
24682554 |
aaaatcaaacgcaaacaataaactgtgcagg--aaaagtaaatacatatcat |
24682603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 76 - 106
Target Start/End: Original strand, 41806275 - 41806305
Alignment:
| Q |
76 |
aaacagtagtaagtgaaatatttagaagatt |
106 |
Q |
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| T |
41806275 |
aaacagtagtaagtgaaatatttagaagatt |
41806305 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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