View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1798_low_66 (Length: 203)
Name: NF1798_low_66
Description: NF1798
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1798_low_66 |
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Alignment Details
Target: chr3 (Bit Score: 127; Significance: 9e-66; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 127; E-Value: 9e-66
Query Start/End: Original strand, 17 - 191
Target Start/End: Original strand, 10355917 - 10356090
Alignment:
| Q |
17 |
aagttctttctgtaatgggggatggtgagaatgtgttacagtcgtcaaagaaaagggttgttagacggaagttcacccgagacactcttattgacaatga |
116 |
Q |
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| T |
10355917 |
aagttctttctgtaatgggggatgttgagaatgtgttacagtcgtcaaagaaaagggttgttggaaggaagctcacctgcgacactcttattgacaatga |
10356016 |
T |
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| Q |
117 |
ggaagatgacgttgacctagaacctaggactttcaagaaagccagtgaggaggttcttgcaaccagagaataatc |
191 |
Q |
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| T |
10356017 |
ggaagatgacgctgacctagaagccgggactttcaagaaag-cagtgaggaggttcttgcaaccagagaataatc |
10356090 |
T |
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Target: chr7 (Bit Score: 123; Significance: 2e-63; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 17 - 191
Target Start/End: Complemental strand, 22008593 - 22008419
Alignment:
| Q |
17 |
aagttctttctgtaatgggggatggtgagaatgtgttacagtcgtcaaagaaaagggttgttagacggaagttcacccgagacactcttattgacaatga |
116 |
Q |
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| T |
22008593 |
aagttctttgtgtaatggggaatgctgagaatgtgttacagtcgtcaaagaaaagggctgctgtacggaagttcacccgagacactcttattgacaatga |
22008494 |
T |
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| Q |
117 |
ggaagatgacgttgacctagaacctaggactttcaagaaagccagtgaggaggttcttgcaaccagagaataatc |
191 |
Q |
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| T |
22008493 |
ggaagatgacgctgacctagaagccgggactttcaacaaagccagtgaggaggttcttgcaactagagaataatc |
22008419 |
T |
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Target: chr4 (Bit Score: 99; Significance: 5e-49; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 17 - 183
Target Start/End: Complemental strand, 3124195 - 3124029
Alignment:
| Q |
17 |
aagttctttctgtaatgggggatggtgagaatgtgttacagtcgtcaaagaaaagggttgttagacggaagttcacccgagacactcttattgacaatga |
116 |
Q |
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|||||||||||||||||||||||| |||||||| |||||||||||||||||||||| || | ||||| || ||||||||||||||| ||||||| |||| |
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| T |
3124195 |
aagttctttctgtaatgggggatgctgagaatgccttacagtcgtcaaagaaaagggctgctggacgggagctcacccgagacactcctattgacgatga |
3124096 |
T |
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| Q |
117 |
ggaagatgacgttgacctagaacctaggactttcaagaaagccagtgaggaggttcttgcaaccaga |
183 |
Q |
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| T |
3124095 |
ggaagatgacactgactttgaagccgggactttcaagaaagccagtgaggaggttcttgcaaccaga |
3124029 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 57; Significance: 5e-24; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 17 - 181
Target Start/End: Original strand, 50668929 - 50669093
Alignment:
| Q |
17 |
aagttctttctgtaatgggggatggtgagaatgtgttacagtcgtcaaagaaaagggttgttagacggaagttcacccgagacactcttattgacaatga |
116 |
Q |
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|||||||||||||||||| ||||| | |||| ||||||||||||||||||||| || | |||| || |||| |||||||||| | ||||| |||| |
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| T |
50668929 |
aagttctttctgtaatggaggatgccaaaaatgccctacagtcgtcaaagaaaagggctgctgaacgggagctcactcgagacactcctcttgacgatga |
50669028 |
T |
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| Q |
117 |
ggaagatgacgttgacctagaacctaggactttcaagaaagccagtgaggaggttcttgcaacca |
181 |
Q |
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|||||||||| |||||| ||| || | |||||||| ||||||||||| |||||||| ||||||| |
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| T |
50669029 |
ggaagatgacactgaccttgaagctggaactttcaaaaaagccagtgacgaggttctggcaacca |
50669093 |
T |
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