View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1798_low_7 (Length: 492)

Name: NF1798_low_7
Description: NF1798
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1798_low_7
NF1798_low_7
[»] chr3 (13 HSPs)
chr3 (143-270)||(9831488-9831615)
chr3 (416-475)||(9831274-9831333)
chr3 (1-74)||(9831684-9831757)
chr3 (439-475)||(15287567-15287603)
chr3 (437-476)||(14746913-14746951)
chr3 (227-265)||(17058044-17058082)
chr3 (438-475)||(20807936-20807973)
chr3 (438-475)||(43453438-43453475)
chr3 (438-474)||(14746040-14746076)
chr3 (439-475)||(16076210-16076246)
chr3 (439-475)||(43454173-43454209)
chr3 (439-471)||(46595871-46595903)
chr3 (439-475)||(52924445-52924481)
[»] scaffold0166 (1 HSPs)
scaffold0166 (212-266)||(6067-6121)
[»] chr5 (10 HSPs)
chr5 (212-266)||(24763570-24763624)
chr5 (212-266)||(20259576-20259630)
chr5 (437-475)||(23253498-23253536)
chr5 (439-475)||(39936255-39936291)
chr5 (437-475)||(7489140-7489178)
chr5 (437-475)||(27345931-27345969)
chr5 (433-475)||(40372172-40372214)
chr5 (438-475)||(23257318-23257355)
chr5 (439-475)||(38129126-38129162)
chr5 (439-475)||(39466885-39466921)
[»] chr7 (11 HSPs)
chr7 (212-266)||(7192000-7192054)
chr7 (439-476)||(41965112-41965149)
chr7 (439-475)||(767136-767172)
chr7 (439-475)||(41965789-41965825)
chr7 (433-476)||(17114139-17114182)
chr7 (437-475)||(767978-768016)
chr7 (439-476)||(24873751-24873788)
chr7 (439-475)||(3314955-3314991)
chr7 (439-475)||(3315475-3315511)
chr7 (439-475)||(33261425-33261461)
chr7 (439-475)||(44120358-44120394)
[»] chr6 (3 HSPs)
chr6 (212-265)||(12026463-12026516)
chr6 (212-265)||(12033383-12033436)
chr6 (215-266)||(28713144-28713195)
[»] scaffold0085 (1 HSPs)
scaffold0085 (212-266)||(24746-24800)
[»] chr1 (8 HSPs)
chr1 (212-266)||(124853-124906)
chr1 (432-475)||(27745549-27745592)
chr1 (433-475)||(16449549-16449591)
chr1 (433-475)||(16459123-16459165)
chr1 (147-189)||(17763695-17763737)
chr1 (439-475)||(26240883-26240919)
chr1 (439-475)||(31109239-31109275)
chr1 (439-475)||(31116696-31116732)
[»] chr8 (7 HSPs)
chr8 (212-263)||(35366556-35366607)
chr8 (439-475)||(26847097-26847133)
chr8 (215-266)||(31619343-31619394)
chr8 (433-475)||(42663271-42663313)
chr8 (438-471)||(5434031-5434064)
chr8 (439-475)||(26132145-26132181)
chr8 (439-475)||(44656329-44656365)
[»] chr4 (7 HSPs)
chr4 (436-475)||(42792772-42792811)
chr4 (439-475)||(52129421-52129457)
chr4 (212-259)||(30558598-30558645)
chr4 (212-266)||(46490258-46490312)
chr4 (438-475)||(21837388-21837425)
chr4 (439-475)||(6258158-6258194)
chr4 (439-475)||(34941502-34941538)
[»] chr2 (4 HSPs)
chr2 (212-266)||(24387241-24387294)
chr2 (438-474)||(7754011-7754047)
chr2 (439-475)||(30202000-30202036)
chr2 (439-475)||(44296860-44296896)


Alignment Details
Target: chr3 (Bit Score: 128; Significance: 6e-66; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 128; E-Value: 6e-66
Query Start/End: Original strand, 143 - 270
Target Start/End: Complemental strand, 9831615 - 9831488
Alignment:
Q  143 cctcaatgttacgtgactcatacgaaaacacgggtctattattagttaagctaataaaaaggtacacataagaaaaatagtagtgtgggtccactttaat 242  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9831615 cctcaatgttacgtgactcatacgaaaacacgggtctattattagttaagctaataaaaaggtacacataagaaaaatagtagtgtgggtccactttaat 9831516  T
Q  243 ataatcaaaattcaaattcatattcata 270  Q
    ||||||||||||||||||||||||||||    
T  9831515 ataatcaaaattcaaattcatattcata 9831488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 416 - 475
Target Start/End: Complemental strand, 9831333 - 9831274
Alignment:
Q  416 tttatattctaagttataaaattggtggattctaaggtgagggtccaattaagtccctca 475  Q
    |||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||    
T  9831333 tttatattctaagttataaaattggtggattctggggtgagggtccaattaagtccctca 9831274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 9831757 - 9831684
Alignment:
Q  1 atacgattcaaatatttaacatacctttttatatataagnnnnnnntatttaatagaacattaatataatgttg 74  Q
    |||||||||||||||||||||||||||||||||||||||        | |||||||||||||||||||||||||    
T  9831757 atacgattcaaatatttaacatacctttttatatataagaaaaaaaaaattaatagaacattaatataatgttg 9831684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 439 - 475
Target Start/End: Original strand, 15287567 - 15287603
Alignment:
Q  439 ggtggattctaaggtgagggtccaattaagtccctca 475  Q
    ||||||||||| |||||||||||||||||||||||||    
T  15287567 ggtggattctagggtgagggtccaattaagtccctca 15287603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 437 - 476
Target Start/End: Complemental strand, 14746951 - 14746913
Alignment:
Q  437 ttggtggattctaaggtgagggtccaattaagtccctcat 476  Q
    ||||||||||||| ||||||||||||||||||||||||||    
T  14746951 ttggtggattcta-ggtgagggtccaattaagtccctcat 14746913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 227 - 265
Target Start/End: Original strand, 17058044 - 17058082
Alignment:
Q  227 gtgggtccactttaatataatcaaaattcaaattcatat 265  Q
    |||||||||||||| |||||||||||||||||| |||||    
T  17058044 gtgggtccactttattataatcaaaattcaaatccatat 17058082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 438 - 475
Target Start/End: Original strand, 20807936 - 20807973
Alignment:
Q  438 tggtggattctaaggtgagggtccaattaagtccctca 475  Q
    |||||||||||| ||||||||| |||||||||||||||    
T  20807936 tggtggattctagggtgagggttcaattaagtccctca 20807973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 438 - 475
Target Start/End: Original strand, 43453438 - 43453475
Alignment:
Q  438 tggtggattctaaggtgagggtccaattaagtccctca 475  Q
    |||||||||||| ||||||||||||||||| |||||||    
T  43453438 tggtggattctagggtgagggtccaattaaatccctca 43453475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 438 - 474
Target Start/End: Original strand, 14746040 - 14746076
Alignment:
Q  438 tggtggattctaaggtgagggtccaattaagtccctc 474  Q
    |||||||||||| ||||||||||||||||| ||||||    
T  14746040 tggtggattctagggtgagggtccaattaaatccctc 14746076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 439 - 475
Target Start/End: Original strand, 16076210 - 16076246
Alignment:
Q  439 ggtggattctaaggtgagggtccaattaagtccctca 475  Q
    ||||||||||| |||||||||||||||| ||||||||    
T  16076210 ggtggattctagggtgagggtccaattaggtccctca 16076246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 439 - 475
Target Start/End: Complemental strand, 43454209 - 43454173
Alignment:
Q  439 ggtggattctaaggtgagggtccaattaagtccctca 475  Q
    ||||||||||| |||||||||||||||| ||||||||    
T  43454209 ggtggattctagggtgagggtccaattaggtccctca 43454173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 439 - 471
Target Start/End: Complemental strand, 46595903 - 46595871
Alignment:
Q  439 ggtggattctaaggtgagggtccaattaagtcc 471  Q
    ||||||||||| |||||||||||||||||||||    
T  46595903 ggtggattctagggtgagggtccaattaagtcc 46595871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 439 - 475
Target Start/End: Complemental strand, 52924481 - 52924445
Alignment:
Q  439 ggtggattctaaggtgagggtccaattaagtccctca 475  Q
    ||||||||||||||||||||  |||||||||||||||    
T  52924481 ggtggattctaaggtgagggagcaattaagtccctca 52924445  T

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Target: scaffold0166 (Bit Score: 51; Significance: 5e-20; HSPs: 1)
Name: scaffold0166
Description:

Target: scaffold0166; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 212 - 266
Target Start/End: Original strand, 6067 - 6121
Alignment:
Q  212 aagaaaaatagtagtgtgggtccactttaatataatcaaaattcaaattcatatt 266  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  6067 aagaaaaatagtattgtgggtccactttaatataatcaaaattcaaattcatatt 6121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 51; Significance: 5e-20; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 212 - 266
Target Start/End: Original strand, 24763570 - 24763624
Alignment:
Q  212 aagaaaaatagtagtgtgggtccactttaatataatcaaaattcaaattcatatt 266  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  24763570 aagaaaaatagtattgtgggtccactttaatataatcaaaattcaaattcatatt 24763624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 212 - 266
Target Start/End: Original strand, 20259576 - 20259630
Alignment:
Q  212 aagaaaaatagtagtgtgggtccactttaatataatcaaaattcaaattcatatt 266  Q
    ||||||||||||| || | |||||||||||||||||||||||| |||| ||||||    
T  20259576 aagaaaaatagtattgcgtgtccactttaatataatcaaaatttaaatacatatt 20259630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 437 - 475
Target Start/End: Complemental strand, 23253536 - 23253498
Alignment:
Q  437 ttggtggattctaaggtgagggtccaattaagtccctca 475  Q
    ||||||||||||| |||||||||||||||||||||||||    
T  23253536 ttggtggattctagggtgagggtccaattaagtccctca 23253498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 439 - 475
Target Start/End: Original strand, 39936255 - 39936291
Alignment:
Q  439 ggtggattctaaggtgagggtccaattaagtccctca 475  Q
    ||||||||||||||||||||| |||||||||||||||    
T  39936255 ggtggattctaaggtgagggttcaattaagtccctca 39936291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 437 - 475
Target Start/End: Complemental strand, 7489178 - 7489140
Alignment:
Q  437 ttggtggattctaaggtgagggtccaattaagtccctca 475  Q
    ||||||||||||||||||||||||| || ||||||||||    
T  7489178 ttggtggattctaaggtgagggtcctatcaagtccctca 7489140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 437 - 475
Target Start/End: Complemental strand, 27345969 - 27345931
Alignment:
Q  437 ttggtggattctaaggtgagggtccaattaagtccctca 475  Q
    ||||||||||||| ||||||||| |||||||||||||||    
T  27345969 ttggtggattctagggtgagggttcaattaagtccctca 27345931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 433 - 475
Target Start/End: Complemental strand, 40372214 - 40372172
Alignment:
Q  433 aaaattggtggattctaaggtgagggtccaattaagtccctca 475  Q
    ||||||||||||||||| ||||||||| ||||||||| |||||    
T  40372214 aaaattggtggattctagggtgagggttcaattaagttcctca 40372172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 438 - 475
Target Start/End: Original strand, 23257318 - 23257355
Alignment:
Q  438 tggtggattctaaggtgagggtccaattaagtccctca 475  Q
    ||||||||||||  ||||||||||||||||||||||||    
T  23257318 tggtggattctagagtgagggtccaattaagtccctca 23257355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 439 - 475
Target Start/End: Original strand, 38129126 - 38129162
Alignment:
Q  439 ggtggattctaaggtgagggtccaattaagtccctca 475  Q
    ||||||||||||||||||||  |||||||||||||||    
T  38129126 ggtggattctaaggtgagggagcaattaagtccctca 38129162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 439 - 475
Target Start/End: Original strand, 39466885 - 39466921
Alignment:
Q  439 ggtggattctaaggtgagggtccaattaagtccctca 475  Q
    |||| |||||| |||||||||||||||||||||||||    
T  39466885 ggtgaattctagggtgagggtccaattaagtccctca 39466921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 1e-17; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 212 - 266
Target Start/End: Complemental strand, 7192054 - 7192000
Alignment:
Q  212 aagaaaaatagtagtgtgggtccactttaatataatcaaaattcaaattcatatt 266  Q
    ||||||||||||| |||||||||||||||||||||||||||||| ||||||||||    
T  7192054 aagaaaaatagtattgtgggtccactttaatataatcaaaattcgaattcatatt 7192000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 439 - 476
Target Start/End: Original strand, 41965112 - 41965149
Alignment:
Q  439 ggtggattctaaggtgagggtccaattaagtccctcat 476  Q
    ||||||||||| ||||||||||||||||||||||||||    
T  41965112 ggtggattctagggtgagggtccaattaagtccctcat 41965149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 439 - 475
Target Start/End: Original strand, 767136 - 767172
Alignment:
Q  439 ggtggattctaaggtgagggtccaattaagtccctca 475  Q
    ||||||||||| |||||||||||||||||||||||||    
T  767136 ggtggattctagggtgagggtccaattaagtccctca 767172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 439 - 475
Target Start/End: Complemental strand, 41965825 - 41965789
Alignment:
Q  439 ggtggattctaaggtgagggtccaattaagtccctca 475  Q
    ||||||||||| |||||||||||||||||||||||||    
T  41965825 ggtggattctagggtgagggtccaattaagtccctca 41965789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 433 - 476
Target Start/End: Original strand, 17114139 - 17114182
Alignment:
Q  433 aaaattggtggattctaaggtgagggtccaattaagtccctcat 476  Q
    |||| |||||||||||| ||||||||| ||||||||||||||||    
T  17114139 aaaaatggtggattctagggtgagggttcaattaagtccctcat 17114182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 437 - 475
Target Start/End: Complemental strand, 768016 - 767978
Alignment:
Q  437 ttggtggattctaaggtgagggtccaattaagtccctca 475  Q
    |||||||||| || |||||||||||||||||||||||||    
T  768016 ttggtggattttagggtgagggtccaattaagtccctca 767978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 439 - 476
Target Start/End: Original strand, 24873751 - 24873788
Alignment:
Q  439 ggtggattctaaggtgagggtccaattaagtccctcat 476  Q
    ||||||||||| |||||||||||||||| |||||||||    
T  24873751 ggtggattctagggtgagggtccaattaggtccctcat 24873788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 439 - 475
Target Start/End: Original strand, 3314955 - 3314991
Alignment:
Q  439 ggtggattctaaggtgagggtccaattaagtccctca 475  Q
    ||||||||||| ||||||||| |||||||||||||||    
T  3314955 ggtggattctacggtgagggttcaattaagtccctca 3314991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 439 - 475
Target Start/End: Complemental strand, 3315511 - 3315475
Alignment:
Q  439 ggtggattctaaggtgagggtccaattaagtccctca 475  Q
    ||||||||||||||||||||  |||||||||||||||    
T  3315511 ggtggattctaaggtgagggctcaattaagtccctca 3315475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 439 - 475
Target Start/End: Complemental strand, 33261461 - 33261425
Alignment:
Q  439 ggtggattctaaggtgagggtccaattaagtccctca 475  Q
    ||||||||||| | |||||||||||||||||||||||    
T  33261461 ggtggattctaggatgagggtccaattaagtccctca 33261425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 439 - 475
Target Start/End: Original strand, 44120358 - 44120394
Alignment:
Q  439 ggtggattctaaggtgagggtccaattaagtccctca 475  Q
    ||||||||||||||||||||  |||||||||||||||    
T  44120358 ggtggattctaaggtgagggagcaattaagtccctca 44120394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 46; Significance: 5e-17; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 212 - 265
Target Start/End: Original strand, 12026463 - 12026516
Alignment:
Q  212 aagaaaaatagtagtgtgggtccactttaatataatcaaaattcaaattcatat 265  Q
    ||||||||||||| ||||||||||||||||||| ||||||||||||||||||||    
T  12026463 aagaaaaatagtattgtgggtccactttaatatcatcaaaattcaaattcatat 12026516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 212 - 265
Target Start/End: Original strand, 12033383 - 12033436
Alignment:
Q  212 aagaaaaatagtagtgtgggtccactttaatataatcaaaattcaaattcatat 265  Q
    ||||||||||||| ||||||||||||||||||| ||||||||||||||||||||    
T  12033383 aagaaaaatagtattgtgggtccactttaatatcatcaaaattcaaattcatat 12033436  T

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Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 215 - 266
Target Start/End: Original strand, 28713144 - 28713195
Alignment:
Q  215 aaaaatagtagtgtgggtccactttaatataatcaaaattcaaattcatatt 266  Q
    |||||||||| |||| ||||||||||||||||| ||||||||||||||||||    
T  28713144 aaaaatagtattgtgagtccactttaatataatgaaaattcaaattcatatt 28713195  T

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Target: scaffold0085 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 212 - 266
Target Start/End: Complemental strand, 24800 - 24746
Alignment:
Q  212 aagaaaaatagtagtgtgggtccactttaatataatcaaaattcaaattcatatt 266  Q
    ||||||||||||| ||||| |||||||||||||||| ||||||||||||||||||    
T  24800 aagaaaaatagtattgtggatccactttaatataataaaaattcaaattcatatt 24746  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 212 - 266
Target Start/End: Complemental strand, 124906 - 124853
Alignment:
Q  212 aagaaaaatagtagtgtgggtccactttaatataatcaaaattcaaattcatatt 266  Q
    ||||||||||||| |||||||| |||||||||||||||||||||| |||||||||    
T  124906 aagaaaaatagtattgtgggtc-actttaatataatcaaaattcatattcatatt 124853  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 432 - 475
Target Start/End: Original strand, 27745549 - 27745592
Alignment:
Q  432 taaaattggtggattctaaggtgagggtccaattaagtccctca 475  Q
    |||||| ||||||||||||||||||||| |||||||||||||||    
T  27745549 taaaataggtggattctaaggtgagggttcaattaagtccctca 27745592  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 433 - 475
Target Start/End: Original strand, 16449549 - 16449591
Alignment:
Q  433 aaaattggtggattctaaggtgagggtccaattaagtccctca 475  Q
    |||| |||||||||||| ||||||||| |||||||||||||||    
T  16449549 aaaaatggtggattctagggtgagggttcaattaagtccctca 16449591  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 433 - 475
Target Start/End: Original strand, 16459123 - 16459165
Alignment:
Q  433 aaaattggtggattctaaggtgagggtccaattaagtccctca 475  Q
    |||| |||||||||||| ||||||||| |||||||||||||||    
T  16459123 aaaaatggtggattctagggtgagggttcaattaagtccctca 16459165  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 147 - 189
Target Start/End: Complemental strand, 17763737 - 17763695
Alignment:
Q  147 aatgttacgtgactcatacgaaaacacgggtctattattagtt 189  Q
    ||||||||||||||| | ||||||||||||||| |||||||||    
T  17763737 aatgttacgtgactcgtgcgaaaacacgggtctcttattagtt 17763695  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 439 - 475
Target Start/End: Complemental strand, 26240919 - 26240883
Alignment:
Q  439 ggtggattctaaggtgagggtccaattaagtccctca 475  Q
    ||||||||||| ||||||||| |||||||||||||||    
T  26240919 ggtggattctagggtgagggttcaattaagtccctca 26240883  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 439 - 475
Target Start/End: Original strand, 31109239 - 31109275
Alignment:
Q  439 ggtggattctaaggtgagggtccaattaagtccctca 475  Q
    ||||||||||| |||||||||||||||| ||||||||    
T  31109239 ggtggattctagggtgagggtccaattaggtccctca 31109275  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 439 - 475
Target Start/End: Complemental strand, 31116732 - 31116696
Alignment:
Q  439 ggtggattctaaggtgagggtccaattaagtccctca 475  Q
    ||||||||||| |||||||||||||||| ||||||||    
T  31116732 ggtggattctagggtgagggtccaattaggtccctca 31116696  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000005; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 212 - 263
Target Start/End: Original strand, 35366556 - 35366607
Alignment:
Q  212 aagaaaaatagtagtgtgggtccactttaatataatcaaaattcaaattcat 263  Q
    |||||||||| || | ||| ||||||||||||||||||||||||||||||||    
T  35366556 aagaaaaataatattatggatccactttaatataatcaaaattcaaattcat 35366607  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 439 - 475
Target Start/End: Original strand, 26847097 - 26847133
Alignment:
Q  439 ggtggattctaaggtgagggtccaattaagtccctca 475  Q
    ||||||||||| |||||||||||||||||||||||||    
T  26847097 ggtggattctagggtgagggtccaattaagtccctca 26847133  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 215 - 266
Target Start/End: Complemental strand, 31619394 - 31619343
Alignment:
Q  215 aaaaatagtagtgtgggtccactttaatataatcaaaattcaaattcatatt 266  Q
    ||||| |||| ||||| || |||||||||| |||||||||||||||||||||    
T  31619394 aaaaaaagtattgtggatcaactttaatatgatcaaaattcaaattcatatt 31619343  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 433 - 475
Target Start/End: Original strand, 42663271 - 42663313
Alignment:
Q  433 aaaattggtggattctaaggtgagggtccaattaagtccctca 475  Q
    ||||||||||||||||| |||||| ||||||||||||| ||||    
T  42663271 aaaattggtggattctagggtgagagtccaattaagtctctca 42663313  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 438 - 471
Target Start/End: Original strand, 5434031 - 5434064
Alignment:
Q  438 tggtggattctaaggtgagggtccaattaagtcc 471  Q
    |||||||||||| |||||||||||||||||||||    
T  5434031 tggtggattctagggtgagggtccaattaagtcc 5434064  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 439 - 475
Target Start/End: Complemental strand, 26132181 - 26132145
Alignment:
Q  439 ggtggattctaaggtgagggtccaattaagtccctca 475  Q
    |||||||| ||||||||||||||||||| ||||||||    
T  26132181 ggtggattttaaggtgagggtccaattaggtccctca 26132145  T

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Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 439 - 475
Target Start/End: Complemental strand, 44656365 - 44656329
Alignment:
Q  439 ggtggattctaaggtgagggtccaattaagtccctca 475  Q
    ||||||||||||||||||||  |||||||||||||||    
T  44656365 ggtggattctaaggtgagggagcaattaagtccctca 44656329  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000005; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 436 - 475
Target Start/End: Original strand, 42792772 - 42792811
Alignment:
Q  436 attggtggattctaaggtgagggtccaattaagtccctca 475  Q
    |||||||||||||| |||||||||||||||||||||||||    
T  42792772 attggtggattctagggtgagggtccaattaagtccctca 42792811  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 439 - 475
Target Start/End: Original strand, 52129421 - 52129457
Alignment:
Q  439 ggtggattctaaggtgagggtccaattaagtccctca 475  Q
    ||||||||||||||||||||| |||||||||||||||    
T  52129421 ggtggattctaaggtgagggttcaattaagtccctca 52129457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 212 - 259
Target Start/End: Complemental strand, 30558645 - 30558598
Alignment:
Q  212 aagaaaaatagtagtgtgggtccactttaatataatcaaaattcaaat 259  Q
    ||||||||||||| |||||||||| ||| |||||||||||||| ||||    
T  30558645 aagaaaaatagtactgtgggtccatttttatataatcaaaatttaaat 30558598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 212 - 266
Target Start/End: Original strand, 46490258 - 46490312
Alignment:
Q  212 aagaaaaatagtagtgtgggtccactttaatataatcaaaattcaaattcatatt 266  Q
    |||||||||| || |||||||||| |||||||||||||||| || |||| |||||    
T  46490258 aagaaaaatattattgtgggtccattttaatataatcaaaactcgaatttatatt 46490312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 438 - 475
Target Start/End: Original strand, 21837388 - 21837425
Alignment:
Q  438 tggtggattctaaggtgagggtccaattaagtccctca 475  Q
    |||||||||||| ||||||||||||| |||||||||||    
T  21837388 tggtggattctagggtgagggtccaactaagtccctca 21837425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 439 - 475
Target Start/End: Complemental strand, 6258194 - 6258158
Alignment:
Q  439 ggtggattctaaggtgagggtccaattaagtccctca 475  Q
    ||||||||||||||||||||  |||||||||||||||    
T  6258194 ggtggattctaaggtgagggagcaattaagtccctca 6258158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 439 - 475
Target Start/End: Original strand, 34941502 - 34941538
Alignment:
Q  439 ggtggattctaaggtgagggtccaattaagtccctca 475  Q
    ||||||||||| ||||||||| |||||||||||||||    
T  34941502 ggtggattctagggtgagggttcaattaagtccctca 34941538  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 212 - 266
Target Start/End: Original strand, 24387241 - 24387294
Alignment:
Q  212 aagaaaaatagtagtgtgggtccactttaatataatcaaaattcaaattcatatt 266  Q
    ||||||||| ||| |||| ||||||||||||||||| ||||||||||||||||||    
T  24387241 aagaaaaat-gtattgtgtgtccactttaatataataaaaattcaaattcatatt 24387294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 438 - 474
Target Start/End: Original strand, 7754011 - 7754047
Alignment:
Q  438 tggtggattctaaggtgagggtccaattaagtccctc 474  Q
    |||||||||||| |||||||||||||||| |||||||    
T  7754011 tggtggattctagggtgagggtccaattaggtccctc 7754047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 439 - 475
Target Start/End: Complemental strand, 30202036 - 30202000
Alignment:
Q  439 ggtggattctaaggtgagggtccaattaagtccctca 475  Q
    ||||||||||||||||||||  |||||||||||||||    
T  30202036 ggtggattctaaggtgagggagcaattaagtccctca 30202000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 439 - 475
Target Start/End: Original strand, 44296860 - 44296896
Alignment:
Q  439 ggtggattctaaggtgagggtccaattaagtccctca 475  Q
    |||| |||||| |||||||||||||||||||||||||    
T  44296860 ggtgaattctagggtgagggtccaattaagtccctca 44296896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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