View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1798_low_8 (Length: 473)
Name: NF1798_low_8
Description: NF1798
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1798_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 448; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 448; E-Value: 0
Query Start/End: Original strand, 1 - 468
Target Start/End: Complemental strand, 36025914 - 36025447
Alignment:
| Q |
1 |
tgatccaaaagggttcttgagaagctggaatgatagtggctttggagcttgttctggaggttgggttggaatcaaatgtgctcaaggaaaagtgattata |
100 |
Q |
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|||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36025914 |
tgatccaaaaggtttcttaagaagctggaatgatagtggctttggagcttgttctggaggttgggttggaatcaaatgtgctcaaggaaaagtgattata |
36025815 |
T |
|
| Q |
101 |
attcagcttccatggaaaggattgaaggggagaatcactgaaaggattggtcaacttgaaggtctaagaaagcttagtcttcataataaccaaattggtg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
36025814 |
attcagcttccatggaaaggattgaaggggagaatcactgagaggattggtcaacttgaaggtcttagaaagcttagtcttcataataaccaaattggtg |
36025715 |
T |
|
| Q |
201 |
gttcaatcccttcaacattaggacttctcaacaatctaagaggtgttcaactcttcaataataggttaacaggttcaattcctgcttcattaggtttttg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36025714 |
gttcaatcccttcaacattaggacttctcaacaatctaagaggtgttcaactcttcaataataggttaacaggttcaattcctgcttcattaggtttttg |
36025615 |
T |
|
| Q |
301 |
tcctatgcttcaatctttagactttagtaacaatttgctcataggtacaatccctgagagtcttggaaatgctactaagctttattggcttaacttgagt |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36025614 |
tcctatgcttcaatctttagactttagtaacaatttgctcataggtacaatccctgagagtcttggaaatgctactaagctttattggcttaacttgagt |
36025515 |
T |
|
| Q |
401 |
ttcaattctatttctggttctataccaactagcctaactagtttgaattctctcactttcatctctct |
468 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
36025514 |
ttcaattctatttctggttctataccaactagcctaactagtttgaattctctcactttcatatctct |
36025447 |
T |
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