View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1798_low_9 (Length: 463)
Name: NF1798_low_9
Description: NF1798
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1798_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 239 - 452
Target Start/End: Complemental strand, 43968747 - 43968534
Alignment:
| Q |
239 |
aagcaaaaatgaatatttcaacaaaggcaatcaaagcaaattcattaattataagcaatagccagccagctacttaataatgaagtaagtattgagatca |
338 |
Q |
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| T |
43968747 |
aagcaaaaatgaatatttcaacaaaggcaatcaaagcaaattcattaattataagcaatagccagccagctacttaataatgaagtaagtattgagatca |
43968648 |
T |
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| Q |
339 |
tatgtgcatgatgatgttaaagaagagcatcacctgcaactgagccttcctttcttctttgcgctgagccacagcaacaaacaaaggctttcttcccacc |
438 |
Q |
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| T |
43968647 |
tatgtgcataatgatgttaaagaagagcatcacctgcaactgagccttcctttcttctttgcgctgagccacagcaacaaacaaaggctttcttcccacc |
43968548 |
T |
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| Q |
439 |
aactttccattcat |
452 |
Q |
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|||||||||||||| |
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| T |
43968547 |
aactttccattcat |
43968534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 163; E-Value: 7e-87
Query Start/End: Original strand, 19 - 210
Target Start/End: Complemental strand, 43968913 - 43968722
Alignment:
| Q |
19 |
aaaactgaaagtaaataaatgtttaaaaggaaacgggttatgtctaatttttatcaaccatgaggattcagaaaggaatgtcaaatagcagaactcaaat |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43968913 |
aaaactgaaagtaaataaatgtttaaaaggaaacgggttatgtcaaatttttatcaaccatgaggattcagaaaggaatgtcaaatagcagaactcaaat |
43968814 |
T |
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| Q |
119 |
aacttgtacacaaaaaagatgagcatttnnnnnnnctagatacaagtcatacaacataccaattataaacaaaaatgaatatttcaacaaag |
210 |
Q |
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| T |
43968813 |
aacttgtacacaaaaaagatgagcatttaaaaaaactagatacaagtcatacaacataccaattataagcaaaaatgaatatttcaacaaag |
43968722 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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