View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17990_high_11 (Length: 461)
Name: NF17990_high_11
Description: NF17990
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17990_high_11 |
 | |
|
| [»] scaffold0076 (1 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 407; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 1 - 446
Target Start/End: Original strand, 35991275 - 35991718
Alignment:
| Q |
1 |
tcaactcatatcactttcaatgtgagactcttaatgcccaaaattaatgttaattaataataagcgcacacatatataccttaatttgttgctaaaatag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35991275 |
tcaactcatatcactttcaatgtgagactcttaacgcccagaattaatgttaattaataataagcgcacacatatataccttaatttgttgctaaaatag |
35991374 |
T |
|
| Q |
101 |
atgaaggagtgaattgcggggcaaatcttctttggcagtgagtttgtttgcatcatctgaatgatcaagtcaactactgccaaagaagtcattgcccagt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35991375 |
atgaaggagtgaattgcggggcaaatcttctttggcggtgagtttgtttgcatcatctgaatgatcaagtcaactactgccaaagaagtcattgcccagt |
35991474 |
T |
|
| Q |
201 |
aatgcacctacacatgagtatcacaaatccttaacaagcttgattagttgattgattgatgatgaacaatttctgggtgcccatatgtgtatatataata |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
35991475 |
aatgcacctacacatgagtatcacaaatccttaacaagcttgattagttgattgattgatgatgaacaatttctgggtgtccatatgtgtatatataata |
35991574 |
T |
|
| Q |
301 |
ttttttggtgatgtgatgataactaaaaacttacacagacatgcatgcacacatatgcataataagccaagggatattccaagtacatcctacgttgagc |
400 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
35991575 |
ttttttggtgatgtgattataactaaaaacttacacagacatgcatgcacacatatgcataataagccaagggatattccaagcacatcctacgttgagc |
35991674 |
T |
|
| Q |
401 |
aactagtaattcttacaaataaagtggaattcatcttgtgcctttg |
446 |
Q |
| |
|
||||||||||||||||||||||||||| | ||||||||||||||| |
|
|
| T |
35991675 |
aactagtaattcttacaaataaagtgg--tccatcttgtgcctttg |
35991718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 107 - 419
Target Start/End: Original strand, 35980627 - 35980933
Alignment:
| Q |
107 |
gagtgaattgcggggcaaatcttctttggcagtgagtttgtttgcatcatctgaatgatcaagtcaactactgccaaagaagtcattgcccagtaatgca |
206 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||| ||||||||||||||||||||| |
|
|
| T |
35980627 |
gagtgaattgcggggcaaatcttctttggcagtgagtttgtttgcatcatctgaaagatcaagtgaactactgccaaaaaagtcattgcccagtaatgca |
35980726 |
T |
|
| Q |
207 |
cctacacatgagtatcacaaatccttaacaagcttgattagttgattgattgatgatgaacaatttctgggtgcccatatgtgtatatataatatttttt |
306 |
Q |
| |
|
| |||||||||||| | | |||||||||||||| | ||||||| |||||||||||||||||| |||| | ||||||||| |||| ||||| || |
|
|
| T |
35980727 |
cttacacatgagta-ctatactccttaacaagcttta----ttgattggttgatgatgaacaatttcacggtgttcttatgtgtatttatagtatttgtt |
35980821 |
T |
|
| Q |
307 |
ggtgatgtga-tgataactaaaaacttacacagacatgcatgca-cacata-tgcataataagccaagggatattccaagtacatcctacgttgagcaac |
403 |
Q |
| |
|
|||||||||| |||||| ||||| ||||||||||||||||| || || |||| |||||||| ||||||||||||||||||||| |||||||||| |
|
|
| T |
35980822 |
ggtgatgtgattgataaataaaa----acacagacatgcatgcagcaactagcacatattaagccaaaggatattccaagtacatcctatgttgagcaac |
35980917 |
T |
|
| Q |
404 |
tagtaattcttacaaa |
419 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
35980918 |
tagtaattcttacaaa |
35980933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 5e-17; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 72 - 137
Target Start/End: Complemental strand, 4985080 - 4985015
Alignment:
| Q |
72 |
atatataccttaatttgttgctaaaatagatgaaggagtgaattgcggggcaaatcttctttggca |
137 |
Q |
| |
|
|||||||||||||||| ||| ||||||| ||||| ||||||||||||||| ||||||||||||||| |
|
|
| T |
4985080 |
atatataccttaatttcttgataaaatacatgaaagagtgaattgcggggaaaatcttctttggca |
4985015 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 290 - 359
Target Start/End: Original strand, 12325365 - 12325434
Alignment:
| Q |
290 |
tatatataatattttttggtgatgtg-atgataactaaaaacttacacagacatgcatgcacacatatgca |
359 |
Q |
| |
|
|||| ||||||||||||||| || || ||||||||||| |||||||| ||||| ||||||||||||||||| |
|
|
| T |
12325365 |
tatagataatattttttggtaatatggatgataactaacaacttacatagaca-gcatgcacacatatgca |
12325434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 72 - 145
Target Start/End: Complemental strand, 4930121 - 4930048
Alignment:
| Q |
72 |
atatataccttaatttgttgctaaaatagatgaaggagtgaattgcggggcaaatcttctttggcagtgagttt |
145 |
Q |
| |
|
|||||||||||||||| ||| ||||||| |||| |||||||||| |||| ||||| ||||||| | ||||||| |
|
|
| T |
4930121 |
atatataccttaatttcttgataaaatacatgatggagtgaattatggggtaaatcatctttgggaatgagttt |
4930048 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 76 - 119
Target Start/End: Complemental strand, 4950766 - 4950723
Alignment:
| Q |
76 |
ataccttaatttgttgctaaaatagatgaaggagtgaattgcgg |
119 |
Q |
| |
|
|||||||||||| ||| ||||||| ||||||||||||||||||| |
|
|
| T |
4950766 |
ataccttaatttcttgataaaatacatgaaggagtgaattgcgg |
4950723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0076 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0076
Description:
Target: scaffold0076; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 290 - 372
Target Start/End: Original strand, 47543 - 47625
Alignment:
| Q |
290 |
tatatataatattttttggtgatgtg-atgataactaaaaacttacacagacatgcatgcacacatatgcataataagccaagg |
372 |
Q |
| |
|
|||| ||||||||||||| | || || ||||||||||| |||||||| ||||| ||||||||||||||||| || |||| |||| |
|
|
| T |
47543 |
tatagataatattttttgataatatggatgataactaacaacttacatagaca-gcatgcacacatatgcagaagaagctaagg |
47625 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University