View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17990_high_14 (Length: 434)
Name: NF17990_high_14
Description: NF17990
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17990_high_14 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 156; Significance: 1e-82; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 233 - 416
Target Start/End: Original strand, 3708509 - 3708691
Alignment:
| Q |
233 |
ggagtactaattaaacatgtcagtatattagtgattactaatatatttcgagagtgaaaagtacttatttatcttttacaaatgaattgtttgagagtgt |
332 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
3708509 |
ggagtactaattaaacatgt-agtatattagtgattactaatatatttcaagagtgaaaaatacttatttatcttttacaaatgaatcgtttgagagtgt |
3708607 |
T |
|
| Q |
333 |
cccaatacagtgactgaactttttcttcaaaatcgaaaggttaagaccaacaaaatctatattcttaagagaagagggaggaaa |
416 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
3708608 |
cctaatacagtgactgaactttttcttcaaaatcgaaaggttaagaccaacaaaatctatattcttaagagaagagagaggaaa |
3708691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 50 - 232
Target Start/End: Original strand, 3708073 - 3708252
Alignment:
| Q |
50 |
aaactacaaatagttcactgattgtaagagaaactctttacttttgctttaatccaaaatcaaacgcataatttcgccatgtcaatcagtgaaccggtta |
149 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||| |||| |
|
|
| T |
3708073 |
aaaccacaaatagttcactgattgtaagagaaactctttacttttgctttaatccaaaatcaaacgaataacttcgccatgtcaatcagtgaaccagtta |
3708172 |
T |
|
| Q |
150 |
catcattctgat-tacaaaaactacaaattttatatgttttttgataatctaaacgcaactaaggtattccttcacctaactaa |
232 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||| |
|
|
| T |
3708173 |
catcattctgatgtacaaaaactacaaattttatatgttttttgataatctaaacgcaacgaag----tccttcacctaactaa |
3708252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 13 - 66
Target Start/End: Original strand, 3708002 - 3708055
Alignment:
| Q |
13 |
agcagagaagataatacatgcactattccaataggcaaaactacaaatagttca |
66 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3708002 |
agcagagaagataatacatgcactattccaataggcaaaactacaaatagttca |
3708055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University