View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17990_high_15 (Length: 367)
Name: NF17990_high_15
Description: NF17990
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17990_high_15 |
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| [»] scaffold0009 (2 HSPs) |
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Alignment Details
Target: scaffold0009 (Bit Score: 142; Significance: 2e-74; HSPs: 2)
Name: scaffold0009
Description:
Target: scaffold0009; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 11 - 203
Target Start/End: Original strand, 10108 - 10302
Alignment:
| Q |
11 |
cagagaagaattgctaaattaaattttaatctcctttgttttagaaaa-aagtcatgaacttaatgaaaaaattcacaaggatatatctatcatttacca |
109 |
Q |
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| T |
10108 |
cagagaagaattgctaaattaaattttaatctcctttgttttacaaaaaaagtcatgaacttaatgaaaaaattcacaaggatatatctatcatttacca |
10207 |
T |
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| Q |
110 |
tgggctgca-tttgttcaatcttcaagccnnnnnnnattgaatatttcacttacaagcatcattaatttatcatcgttgatggaatcattatttt |
203 |
Q |
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| T |
10208 |
tgggctgcatttttttcaatcttcaagcctttttttattgaatttttcacttacaggcatcattaatttatcatcgttgatggaatcattatttt |
10302 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 243 - 318
Target Start/End: Original strand, 10310 - 10385
Alignment:
| Q |
243 |
tgttaaaagatactttatcaagaatgaattttgatatagatttgttcaattcaactacagatgggttaaaagaact |
318 |
Q |
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| T |
10310 |
tgttaaaagatactttatcaagaatgaattttgatatagatttgttcaattcaactacagatgggttaaaagaact |
10385 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 85; Significance: 2e-40; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 16 - 278
Target Start/End: Complemental strand, 36480963 - 36480718
Alignment:
| Q |
16 |
aagaattgctaaattaaattttaatctcctttgttttagaaaaaagtcatgaacttaatgaaaaaattcacaaggatatatctatcatttaccatgggct |
115 |
Q |
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| T |
36480963 |
aagaattgctaatttaaattttaatctcatttgttttacaaaatagtcatgaacttaatgaaaaa-ttcacaaggatatatcaatctttta--------- |
36480874 |
T |
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| Q |
116 |
gcatttgttcaatcttcaagccnnnnnnn-attgaatatttcacttacaagcatcattaatttatcatcgttgatggaatcattattttatcatgatatt |
214 |
Q |
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| T |
36480873 |
---ttggttcaatcttcaagccatttttttattgaatttttcacttacaaccatcgtg----tatcatcattgaaggaatcattattttaccatgatttt |
36480781 |
T |
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| Q |
215 |
tttcaatgcagattttcatatcagaatttgttaaaagatactttatcaagaatgaattttgata |
278 |
Q |
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| T |
36480780 |
tttcaatgtagattttcctaacagaatttgtt-gaagatactttatcaagaatgaattttgata |
36480718 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 213 - 247
Target Start/End: Original strand, 6942032 - 6942066
Alignment:
| Q |
213 |
tttttcaatgcagattttcatatcagaatttgtta |
247 |
Q |
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| T |
6942032 |
tttttcaatgcagattttcatagcagaatttgtta |
6942066 |
T |
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