View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17990_high_16 (Length: 357)
Name: NF17990_high_16
Description: NF17990
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17990_high_16 |
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Alignment Details
Target: chr2 (Bit Score: 317; Significance: 1e-179; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 10 - 342
Target Start/End: Original strand, 41965874 - 41966206
Alignment:
| Q |
10 |
aagaatatctgcaaccttaggaacttcgtttgagttgtgactactattcatcaagttccaatctgtttaatcatcaataaaataatcaacaaaacatagg |
109 |
Q |
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| T |
41965874 |
aagaaaatctgcaacctttggaacttcgtttgagttgtgactactattcatcaagttccaatctgtttaatcatcaataaaataatcaacaaaacatagg |
41965973 |
T |
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| Q |
110 |
ttatatttatatatgtggcagcttgaagcagatataaaagaggttgattaaattaccatgattttggaaagggttttgcaacatgctgtcattgactaat |
209 |
Q |
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| T |
41965974 |
ttatatttatatatgtggcagcttgaagcagatataaaagaggttgattaaattaccatgattttggaaagggttttgcaacatgttgtcattgactaat |
41966073 |
T |
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| Q |
210 |
gttccaagagaaaagtgatgatgagattgatttggttgaagatgaggtggtaatgaaggatgatgagttggagaaagtggagatgaaagccagttatttg |
309 |
Q |
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| T |
41966074 |
gttccaagagaaaagtgatgatgagattgatttggttgaagatgaggtggtaatgaaggatgatgagttggagaaagtggaaatgaaagccagttatttg |
41966173 |
T |
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| Q |
310 |
agcccatattcagtacaaattaagcacaacctg |
342 |
Q |
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| T |
41966174 |
agcccatattcagtacaaattaagcacaacctg |
41966206 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 163 - 231
Target Start/End: Original strand, 24563937 - 24563999
Alignment:
| Q |
163 |
taccatgattttggaaagggttttgcaacatgctgtcattgactaatgttccaagagaaaagtgatgat |
231 |
Q |
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| T |
24563937 |
taccatgattttggaaagggtttt---ccatgttgtcattgactaa---tccaagaggaaagtgatgat |
24563999 |
T |
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