View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17990_high_21 (Length: 286)
Name: NF17990_high_21
Description: NF17990
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17990_high_21 |
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Alignment Details
Target: chr4 (Bit Score: 235; Significance: 1e-130; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 28 - 274
Target Start/End: Complemental strand, 22076431 - 22076185
Alignment:
| Q |
28 |
acattcaactaatttggttacatacaactaagctctcactttatcattgatgccccaccataatatcattgtcagatatgtcaccatgagaacttcacaa |
127 |
Q |
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| T |
22076431 |
acatccaactaatttggttacatacaactaagctctcactttatcattgatgccccaccataatatcattgtcagatatgtcaccatgagaacttcacaa |
22076332 |
T |
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| Q |
128 |
cattcaggaatcaaactcctgtatctatcttcaattatgtaacaccttattttataaggttacagatcacaattataggtttataacaaaacctttcacc |
227 |
Q |
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| T |
22076331 |
cattcaggaatcaaactcctgtatctatcttcaatgatgtaacaccttattttataaggttacaaatcacaattataggtttataacaaaacctttcacc |
22076232 |
T |
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| Q |
228 |
aacatgtcattctatcaaagcctttataaaatcttaatccttagtat |
274 |
Q |
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| T |
22076231 |
aacatgtcattctatcaaagcctttataaaatcttaatccttagtat |
22076185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 193 - 278
Target Start/End: Original strand, 22058949 - 22059034
Alignment:
| Q |
193 |
atcacaattataggtttataacaaaacctttcaccaacatgtcattctatcaaagcctttataaaatcttaatccttagtattatc |
278 |
Q |
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|||||||||| ||| |||||||| ||||||||| | ||||||| | || |||||| ||||||| | ||||||||||||||||| |
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| T |
22058949 |
atcacaattaagggtccataacaaagcctttcacctaaatgtcatattctccaagcctctataaaagcctaatccttagtattatc |
22059034 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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