View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17990_high_25 (Length: 256)
Name: NF17990_high_25
Description: NF17990
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17990_high_25 |
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Alignment Details
Target: chr6 (Bit Score: 163; Significance: 4e-87; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 13 - 239
Target Start/End: Original strand, 896034 - 896275
Alignment:
| Q |
13 |
aatattaatgttcttagagatattacgagggcctaaagaaaaacattcttagaaaattgcattttcctttttaatgannnnnnnaagctag--------- |
103 |
Q |
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| T |
896034 |
aatattaatgttcttagagatactacgagggcctaaagaaaaacattcttagaaaattgcattttcctttttaatgatttttttaagctagagcctagct |
896133 |
T |
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| Q |
104 |
------ttgaatccattaaagatattatatgtgaatgaatatcttaatatctttaagatatagttcattcacaaatagttaattaaagatattatcagtt |
197 |
Q |
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| T |
896134 |
taaaaattgaatccattaaagatattatatgtgaatgaatatcttaatatctttaagatatagttcattcacaaatagttaattaaagatattatcagtt |
896233 |
T |
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| Q |
198 |
gtttcaaaataatcacacaagacataataacgcggttattat |
239 |
Q |
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| T |
896234 |
ctttcaaaataatcacacaagacataataacgcggttattat |
896275 |
T |
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