View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17990_high_3 (Length: 656)

Name: NF17990_high_3
Description: NF17990
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17990_high_3
NF17990_high_3
[»] chr2 (10 HSPs)
chr2 (8-640)||(31648213-31648845)
chr2 (163-632)||(31662740-31663195)
chr2 (27-352)||(31655254-31655577)
chr2 (381-634)||(31655576-31655839)
chr2 (484-622)||(41646127-41646265)
chr2 (484-612)||(7573521-7573648)
chr2 (484-612)||(16668116-16668243)
chr2 (484-622)||(29455905-29456042)
chr2 (484-622)||(43564694-43564832)
chr2 (544-613)||(5968310-5968378)
[»] chr4 (8 HSPs)
chr4 (484-622)||(53829930-53830068)
chr4 (484-622)||(21632197-21632335)
chr4 (484-622)||(21803473-21803611)
chr4 (484-622)||(5431285-5431423)
chr4 (484-613)||(20036820-20036949)
chr4 (484-612)||(2504430-2504557)
chr4 (484-608)||(34737246-34737370)
chr4 (484-612)||(46092883-46093010)
[»] chr7 (3 HSPs)
chr7 (484-622)||(47233247-47233385)
chr7 (484-612)||(25419005-25419132)
chr7 (484-622)||(44394240-44394378)
[»] chr1 (4 HSPs)
chr1 (484-622)||(39624017-39624155)
chr1 (484-612)||(13786814-13786941)
chr1 (484-612)||(25807201-25807328)
chr1 (524-622)||(22912075-22912171)
[»] scaffold0516 (2 HSPs)
scaffold0516 (484-622)||(3833-3971)
scaffold0516 (489-611)||(4065-4185)
[»] chr8 (5 HSPs)
chr8 (484-622)||(4138858-4138996)
chr8 (484-622)||(10186929-10187067)
chr8 (489-622)||(918414-918547)
chr8 (484-622)||(20172529-20172667)
chr8 (540-622)||(11427590-11427672)
[»] scaffold0084 (2 HSPs)
scaffold0084 (484-613)||(11468-11597)
scaffold0084 (521-611)||(13325-13417)
[»] chr6 (3 HSPs)
chr6 (484-612)||(13432883-13433010)
chr6 (489-622)||(18883132-18883266)
chr6 (484-622)||(16711541-16711678)
[»] chr3 (4 HSPs)
chr3 (484-612)||(52350311-52350438)
chr3 (484-622)||(26215887-26216025)
chr3 (484-622)||(48266833-48266971)
chr3 (484-622)||(35870921-35871057)
[»] chr5 (3 HSPs)
chr5 (484-612)||(36991626-36991753)
chr5 (484-612)||(37301349-37301477)
chr5 (484-622)||(21604556-21604693)


Alignment Details
Target: chr2 (Bit Score: 513; Significance: 0; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 513; E-Value: 0
Query Start/End: Original strand, 8 - 640
Target Start/End: Original strand, 31648213 - 31648845
Alignment:
Q  8 gtgagatgaacctgactaggaacttttgtctatatacttccaaatgggaacagtttttaaatttgcaagtaggaaggttatcaagttgaataaaaggcca 107  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  31648213 gtgaaatgaacctgactaggaacttttgtctatatacttccaaatgggaacagtttttaaatttgcaagtaggaaggttaacaagttgaataaaaggcca 31648312  T
Q  108 tatccctctttttcctcttcatatccattaataccttatttagcctagctaattactagttatagaaggtgttaattaatttacactaccaaaaatataa 207  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  31648313 tatccctccttttcctcttcatatccattaataccttatttagcctagctagttactagttatagaaggtgttaattaatttacactaccaaaaatataa 31648412  T
Q  208 tggagaatatgctttggcttccaacaaattatggcaaaaaggcaatggaagatgaacttataagaggacgtgacatggcaaatcaattacttgaagtatt 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31648413 tggagaatatgctttggcttccaacaaattatggcaaaaaggcaatggaagatgaacttataagaggacgtgacatggcaaatcaattacttgaagtatt 31648512  T
Q  308 aacttttgatgataagtcaaatattaaagaagttaaagggtcaaacacaaaatcatcaaacgtgttaccctttaatattgttgctgaagatcttgtgcgt 407  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||    
T  31648513 aacttttgatgataagtcaaatattagagaagttaaagggtcaaacacaaaatcatcaaaagtgttacccttaaatattgttgctgaagatcttgtgcgt 31648612  T
Q  408 gaggttcttaaatcattgacaaatacacttttgcttttgaataatggtatagagtccaatgatgtggcagtccccgtaacaattagagatttttcctttt 507  Q
    ||||| || |||||||||||||| ||||||||||| ||||| ||||| | ||| ||||||||||||| ||| ||  ||||  ||| ||||||||| ||||    
T  31648613 gaggtgctcaaatcattgacaaacacacttttgctgttgaacaatggcaaagactccaatgatgtggtagttcctataactgttaaagatttttcttttt 31648712  T
Q  508 caactaattttcctaagatggaggaggatttggatggagcttacaagaaactcaaaactctaaacaccaaaaatccaaaagtgtcgaacaagagaaagta 607  Q
    ||||||||| || ||||||||||||||||| ||||||||||||||||||||||||||| || |||||||||||||| |||||||||||||||||||||||    
T  31648713 caactaattgtcataagatggaggaggattcggatggagcttacaagaaactcaaaacactcaacaccaaaaatccgaaagtgtcgaacaagagaaagta 31648812  T
Q  608 agaatcataatccatgttttatactttgttcct 640  Q
    |||||||||||||||||||||| ||||||||||    
T  31648813 agaatcataatccatgttttatgctttgttcct 31648845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 163 - 632
Target Start/End: Complemental strand, 31663195 - 31662740
Alignment:
Q  163 ctagttatag-aaggtgttaattaatttacactaccaaaaatataatggagaatatgctttggcttccaacaaattatggcaaaaaggcaatggaagatg 261  Q
    |||||||||| || |||||||||||||||||||||||||||   |||||||||| |||||||||||||||||||| |   ||| ||||||||||||||||    
T  31663195 ctagttatagcaaagtgttaattaatttacactaccaaaaa---aatggagaatctgctttggcttccaacaaatga---caagaaggcaatggaagatg 31663102  T
Q  262 aacttataagaggacgtgacatggcaaatcaattacttgaagtattaacttttgatgataagtcaaatattaaagaagttaaagggtcaaacacaaaatc 361  Q
    | |||||||||||||||||||||||||||||||||||||| | | | |||| ||||||||||||||||||   |||||| |||||||||||  |||||||    
T  31663101 agcttataagaggacgtgacatggcaaatcaattacttgaggcactgacttatgatgataagtcaaatat---agaagtgaaagggtcaaattcaaaatc 31663005  T
Q  362 atcaaacgtgttaccctttaatattgttgctgaagatcttgtgcgtgaggttcttaaatcattgacaaatacacttttgcttttgaataatggtatagag 461  Q
    ||||   ||||||||||| |      |||| | |||||||||||||||||| |||||||||||||||||||||||||| || ||||||||  | | |||     
T  31663004 atcaccagtgttacccttaa------ttgcaggagatcttgtgcgtgaggtacttaaatcattgacaaatacacttttactcttgaataactgcaaagac 31662911  T
Q  462 tccaatgatgtggcagtccccgtaacaattagagatttttccttttcaactaattttcctaagatggaggaggatttggatggagcttacaagaaactca 561  Q
    ||||||||||||||  | ||  |||| |||||||||||||| || ||||| ||||     ||| | ||||||||||| |||||| ||| |||||||||||    
T  31662910 tccaatgatgtggctcttcctataactattagagatttttctttctcaacgaattgcaacaagcttgaggaggattttgatggatcttgcaagaaactca 31662811  T
Q  562 aaactctaaacaccaaaaatccaaaagtgtcgaacaagagaaagtaagaatcataatccatgttttatact 632  Q
    | ||||| ||||||||||||||||||| ||||||||||||||||||||| | ||||||||||| |||||||    
T  31662810 agactctcaacaccaaaaatccaaaagggtcgaacaagagaaagtaagatttataatccatgtcttatact 31662740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 113; E-Value: 7e-57
Query Start/End: Original strand, 27 - 352
Target Start/End: Original strand, 31655254 - 31655577
Alignment:
Q  27 gaacttttgtctatatacttccaaatgggaacagtttttaaatttgcaagtaggaaggttatcaagttgaataaaaggccatatccctctttttc-ctct 125  Q
    ||||||||||||| ||||| |||||||||| ||  ||||||||||||||||||||||  || |||||||||||||||| | |   |||||||||| ||||    
T  31655254 gaacttttgtctaaatact-ccaaatgggatcaaattttaaatttgcaagtaggaag--taccaagttgaataaaaggtcgtgcacctctttttctctct 31655350  T
Q  126 tcatatccattaataccttatttagcctagctaattactagttatag-aaggtgttaattaatttaca------ctaccaaaaatataatggagaatatg 218  Q
    |||||||||| |     ||||||| ||||  || || |||||||||| ||  || | |||||||||||      | ||  || |||| |||||||||  |    
T  31655351 tcatatccatca-----ttatttaaccta--tagttcctagttatagcaaattgatgattaatttacatataaacaacagaagatatcatggagaatcag 31655443  T
Q  219 ctttggcttccaacaaattatggcaaaaaggcaatggaagatgaacttataagaggacgtgacatggcaaatcaattacttgaagtattaacttttgatg 318  Q
    |||| |||||| |||||||| || ||||||||||||||||| || || ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31655444 cttttgcttcctacaaattacggtaaaaaggcaatggaagaagagctaataagaggacgtgacatggcaaatcaattacttgaagtattaacttttgatg 31655543  T
Q  319 ataagtcaaatattaaagaagttaaagggtcaaa 352  Q
    ||||||||||||||| ||||||||||||||||||    
T  31655544 ataagtcaaatattagagaagttaaagggtcaaa 31655577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 381 - 634
Target Start/End: Original strand, 31655576 - 31655839
Alignment:
Q  381 aatattgttgctgaagatcttgtgcgtgaggttcttaaatcattgacaaatacacttttgcttttgaataatggtatagagtccaatgatgtggcagtcc 480  Q
    ||||||||||||||||||||||||| |||||| || |||||||||||||||||||||||| | ||||| ||||| | ||||||||||||| |||| || |    
T  31655576 aatattgttgctgaagatcttgtgcttgaggtgctcaaatcattgacaaatacacttttgatgttgaacaatggcaaagagtccaatgatatggctgttc 31655675  T
Q  481 c-------cgta--acaattagagatttttccttttcaactaattttcctaagatggaggaggatttggatggagcttacaagaaactcaaaactctaaa 571  Q
    |       | ||  || || ||||||||||| |||||| | ||||  || ||||||||||||||||||||  ||| |||||||||| || ||||||| ||    
T  31655676 ctacaactcctacaactatcagagatttttctttttcatccaattgcccaaagatggaggaggatttggacagaggttacaagaaattcgaaactctcaa 31655775  T
Q  572 caccaaaaatccaaaagtgtcgaacaagagaaagtaagaatcataatccat-gttttatacttt 634  Q
    ||||||||||||||||| |||||||||||||||||||||||  | |||||| ||||||||||||    
T  31655776 caccaaaaatccaaaagggtcgaacaagagaaagtaagaattcttatccatggttttatacttt 31655839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 484 - 622
Target Start/End: Complemental strand, 41646265 - 41646127
Alignment:
Q  484 taacaattagagatttttccttttcaactaattttcctaagatggaggaggatttggatggagcttacaagaaactcaaaactctaaacaccaaaaatcc 583  Q
    |||| ||||||||||||| ||| |||| |||||||| ||||||||| |||||||||| |||| |||||||||||||||||||||| ||||||||||||||    
T  41646265 taactattagagattttttcttctcaattaattttcataagatggacgaggatttggttggatcttacaagaaactcaaaactctcaacaccaaaaatcc 41646166  T
Q  584 aaaagtgtcgaacaagagaaagtaagaatcataatccat 622  Q
     |||| |||||||||||||||||||||||| | ||||||    
T  41646165 taaagggtcgaacaagagaaagtaagaatctttatccat 41646127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 81; E-Value: 9e-38
Query Start/End: Original strand, 484 - 612
Target Start/End: Complemental strand, 7573648 - 7573521
Alignment:
Q  484 taacaattagagatttttccttttcaactaattttcctaagatggaggaggatttggatggagcttacaagaaactcaaaactctaaacaccaaaaatcc 583  Q
    |||| ||||||||||||||||| ||||||||||  | |||||||||||||||||||| |||| |||||||||||||||||||||| ||||||||||||||    
T  7573648 taactattagagatttttccttctcaactaattgccataagatggaggaggatttggttggatcttacaagaaactcaaaactctcaacaccaaaaatcc 7573549  T
Q  584 aaaagtgtcgaacaagagaaagtaagaat 612  Q
     |||| |||||| ||||||||||||||||    
T  7573548 taaag-gtcgaataagagaaagtaagaat 7573521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 484 - 612
Target Start/End: Complemental strand, 16668243 - 16668116
Alignment:
Q  484 taacaattagagatttttccttttcaactaattttcctaagatggaggaggatttggatggagcttacaagaaactcaaaactctaaacaccaaaaatcc 583  Q
    |||| ||||||||||||||||| ||| ||||||  | |||||||||||||||||||| |||| |||||||||||||||||||||| ||||||||||||||    
T  16668243 taactattagagatttttccttctcagctaattgccataagatggaggaggatttggttggatcttacaagaaactcaaaactctcaacaccaaaaatcc 16668144  T
Q  584 aaaagtgtcgaacaagagaaagtaagaat 612  Q
     |||| |||||| ||||||||||||||||    
T  16668143 taaag-gtcgaataagagaaagtaagaat 16668116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 484 - 622
Target Start/End: Original strand, 29455905 - 29456042
Alignment:
Q  484 taacaattagagatttttccttttcaactaattttcctaagatggaggaggatttggatggagcttacaagaaactcaaaactctaaacaccaaaaatcc 583  Q
    |||| ||||||| ||||||||| ||||||||||  | ||| |||||||||||||||| |||| |||||||||||||||||||||| ||||||||||||||    
T  29455905 taactattagagttttttccttctcaactaattgccataa-atggaggaggatttggttggatcttacaagaaactcaaaactctcaacaccaaaaatcc 29456003  T
Q  584 aaaagtgtcgaacaagagaaagtaagaatcataatccat 622  Q
     |||| ||||||||||| |||||||||||| | ||||||    
T  29456004 taaagggtcgaacaagataaagtaagaatctttatccat 29456042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 484 - 622
Target Start/End: Original strand, 43564694 - 43564832
Alignment:
Q  484 taacaattagagatttttccttttcaactaattttcctaagatggaggaggatttggatggagcttacaagaaactcaaaactctaaacaccaaaaatcc 583  Q
    |||| |||||| ||||||||||  |||||||||  | |||||||||||| ||||||| |||| |||||||||||||||||||||| |||||||||||| |    
T  43564694 taactattagatatttttccttcccaactaattgccataagatggaggatgatttggttggatcttacaagaaactcaaaactctcaacaccaaaaattc 43564793  T
Q  584 aaaagtgtcgaacaagagaaagtaagaatcataatccat 622  Q
     |||| ||||||||||| |||||||||||| | ||||||    
T  43564794 taaagggtcgaacaagataaagtaagaatctttatccat 43564832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 544 - 613
Target Start/End: Complemental strand, 5968378 - 5968310
Alignment:
Q  544 gagcttacaagaaactcaaaactctaaacaccaaaaatccaaaagtgtcgaacaagagaaagtaagaatc 613  Q
    |||||||||||||||| |||||||| |||| ||||||||| |||| ||||||||||||||| ||||||||    
T  5968378 gagcttacaagaaacttaaaactctcaacatcaaaaatcctaaag-gtcgaacaagagaaactaagaatc 5968310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 95; Significance: 4e-46; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 484 - 622
Target Start/End: Complemental strand, 53830068 - 53829930
Alignment:
Q  484 taacaattagagatttttccttttcaactaattttcctaagatggaggaggatttggatggagcttacaagaaactcaaaactctaaacaccaaaaatcc 583  Q
    |||| ||||||||||||||||| ||||||||||| | |||||||||||||||||||| |||| |||||||||||||||||||||| ||||||||||||||    
T  53830068 taactattagagatttttccttctcaactaatttccataagatggaggaggatttggttggatcttacaagaaactcaaaactctcaacaccaaaaatcc 53829969  T
Q  584 aaaagtgtcgaacaagagaaagtaagaatcataatccat 622  Q
     |||| |||||||||||||||||||||||| | ||||||    
T  53829968 taaagggtcgaacaagagaaagtaagaatctttatccat 53829930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 91; E-Value: 9e-44
Query Start/End: Original strand, 484 - 622
Target Start/End: Complemental strand, 21632335 - 21632197
Alignment:
Q  484 taacaattagagatttttccttttcaactaattttcctaagatggaggaggatttggatggagcttacaagaaactcaaaactctaaacaccaaaaatcc 583  Q
    |||| ||||||||||||||||| ||||||||||  | ||||||||||||||||| ||||||| |||||||||||||||||||||| ||||||||||||||    
T  21632335 taactattagagatttttccttctcaactaattgccataagatggaggaggattaggatggatcttacaagaaactcaaaactctcaacaccaaaaatcc 21632236  T
Q  584 aaaagtgtcgaacaagagaaagtaagaatcataatccat 622  Q
     |||| |||||||||||||||||||||||| | ||||||    
T  21632235 taaagggtcgaacaagagaaagtaagaatctttatccat 21632197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 484 - 622
Target Start/End: Original strand, 21803473 - 21803611
Alignment:
Q  484 taacaattagagatttttccttttcaactaattttcctaagatggaggaggatttggatggagcttacaagaaactcaaaactctaaacaccaaaaatcc 583  Q
    |||| ||||||||||||||||| ||||||||||  | ||||||||||||||||| ||||||| |||||||||||||||||||||| |||||||||| |||    
T  21803473 taactattagagatttttccttctcaactaattgccataagatggaggaggattaggatggatcttacaagaaactcaaaactctcaacaccaaaattcc 21803572  T
Q  584 aaaagtgtcgaacaagagaaagtaagaatcataatccat 622  Q
     |||| |||||||||||||||||||||||| | ||||||    
T  21803573 taaagggtcgaacaagagaaagtaagaatctttatccat 21803611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 484 - 622
Target Start/End: Original strand, 5431285 - 5431423
Alignment:
Q  484 taacaattagagatttttccttttcaactaattttcctaagatggaggaggatttggatggagcttacaagaaactcaaaactctaaacaccaaaaatcc 583  Q
    |||| |||||| |||||||||| ||||||||||  | |||||||||||||||||| ||||||||||||||||||||||||||||| |||| |||||||||    
T  5431285 taactattagatatttttccttctcaactaattgccataagatggaggaggattttgatggagcttacaagaaactcaaaactctcaacatcaaaaatcc 5431384  T
Q  584 aaaagtgtcgaacaagagaaagtaagaatcataatccat 622  Q
     |||| ||||||||||||||| |||||||| | ||||||    
T  5431385 taaagggtcgaacaagagaaactaagaatctttatccat 5431423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 484 - 613
Target Start/End: Original strand, 20036820 - 20036949
Alignment:
Q  484 taacaattagagatttttccttttcaactaattttcctaagatggaggaggatttggatggagcttacaagaaactcaaaactctaaacaccaaaaatcc 583  Q
    |||| ||||||||||||||||| ||||||||||  | ||||| ||||| |||||||||||||||||||||||||||||||||||| |||||||||||| |    
T  20036820 taactattagagatttttccttctcaactaattgccataagaaggaggtggatttggatggagcttacaagaaactcaaaactctcaacaccaaaaattc 20036919  T
Q  584 aaaagtgtcgaacaagagaaagtaagaatc 613  Q
    ||||| ||||||||||| || |||||||||    
T  20036920 aaaagggtcgaacaagataacgtaagaatc 20036949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 81; E-Value: 9e-38
Query Start/End: Original strand, 484 - 612
Target Start/End: Complemental strand, 2504557 - 2504430
Alignment:
Q  484 taacaattagagatttttccttttcaactaattttcctaagatggaggaggatttggatggagcttacaagaaactcaaaactctaaacaccaaaaatcc 583  Q
    |||| ||||||||||||||||| ||||||||||  | |||||||||||||||||||| |||| |||||||||||||||||||||| ||||||||||||||    
T  2504557 taactattagagatttttccttctcaactaattgccataagatggaggaggatttggttggatcttacaagaaactcaaaactctcaacaccaaaaatcc 2504458  T
Q  584 aaaagtgtcgaacaagagaaagtaagaat 612  Q
     |||| |||||| ||||||||||||||||    
T  2504457 taaag-gtcgaataagagaaagtaagaat 2504430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 81; E-Value: 9e-38
Query Start/End: Original strand, 484 - 608
Target Start/End: Complemental strand, 34737370 - 34737246
Alignment:
Q  484 taacaattagagatttttccttttcaactaattttcctaagatggaggaggatttggatggagcttacaagaaactcaaaactctaaacaccaaaaatcc 583  Q
    |||| |||||||||||||| || |||||||||| || ||||||| ||||||||||||||||| |||||||||||||||||||||| ||||||||||||||    
T  34737370 taactattagagatttttcattctcaactaattgtcataagatgaaggaggatttggatggatcttacaagaaactcaaaactctcaacaccaaaaatcc 34737271  T
Q  584 aaaagtgtcgaacaagagaaagtaa 608  Q
     |||| ||||||||||| |||||||    
T  34737270 taaagggtcgaacaagataaagtaa 34737246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 484 - 612
Target Start/End: Original strand, 46092883 - 46093010
Alignment:
Q  484 taacaattagagatttttccttttcaactaattttcctaagatggaggaggatttggatggagcttacaagaaactcaaaactctaaacaccaaaaatcc 583  Q
    |||| ||||||||||||||||| ||||||||||    |||||||||||||||||||| |||| |||||||||||||||||||||| ||||||||||||||    
T  46092883 taactattagagatttttccttctcaactaattgcaataagatggaggaggatttggttggatcttacaagaaactcaaaactctcaacaccaaaaatcc 46092982  T
Q  584 aaaagtgtcgaacaagagaaagtaagaat 612  Q
     |||| |||||| ||||||||||||||||    
T  46092983 taaag-gtcgaataagagaaagtaagaat 46093010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 87; Significance: 2e-41; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 484 - 622
Target Start/End: Complemental strand, 47233385 - 47233247
Alignment:
Q  484 taacaattagagatttttccttttcaactaattttcctaagatggaggaggatttggatggagcttacaagaaactcaaaactctaaacaccaaaaatcc 583  Q
    |||| |||||||||||||||||  ||||||||| || |||||||||||||||||||| || | |||||||||||||||||||||| ||||||||||||||    
T  47233385 taactattagagatttttccttcacaactaattgtcataagatggaggaggatttggttgaatcttacaagaaactcaaaactctcaacaccaaaaatcc 47233286  T
Q  584 aaaagtgtcgaacaagagaaagtaagaatcataatccat 622  Q
     |||| |||||||||||||||||||||||| | ||||||    
T  47233285 taaagggtcgaacaagagaaagtaagaatctttatccat 47233247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 81; E-Value: 9e-38
Query Start/End: Original strand, 484 - 612
Target Start/End: Complemental strand, 25419132 - 25419005
Alignment:
Q  484 taacaattagagatttttccttttcaactaattttcctaagatggaggaggatttggatggagcttacaagaaactcaaaactctaaacaccaaaaatcc 583  Q
    |||| ||||||||||||||||| ||||||||||  | |||||||||||||||||||| |||| |||||||||||||||||||||| ||||||||||||||    
T  25419132 taactattagagatttttccttctcaactaattgccataagatggaggaggatttggttggatcttacaagaaactcaaaactctcaacaccaaaaatcc 25419033  T
Q  584 aaaagtgtcgaacaagagaaagtaagaat 612  Q
     |||| |||||| ||||||||||||||||    
T  25419032 taaag-gtcgaataagagaaagtaagaat 25419005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 484 - 622
Target Start/End: Original strand, 44394240 - 44394378
Alignment:
Q  484 taacaattagagatttttccttttcaactaattttcctaagatggaggaggatttggatggagcttacaagaaactcaaaactctaaacaccaaaaatcc 583  Q
    |||| |||||| |||||||||| ||||||||||  | |||||||||||||||||| |||| |||||||||||||||||||||||| |||| |||||||||    
T  44394240 taactattagatatttttccttctcaactaattgccataagatggaggaggattttgatgaagcttacaagaaactcaaaactctcaacatcaaaaatcc 44394339  T
Q  584 aaaagtgtcgaacaagagaaagtaagaatcataatccat 622  Q
     |||  ||||||||||||||| |||||||| | ||||||    
T  44394340 taaaaggtcgaacaagagaaactaagaatctttatccat 44394378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 87; Significance: 2e-41; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 484 - 622
Target Start/End: Original strand, 39624017 - 39624155
Alignment:
Q  484 taacaattagagatttttccttttcaactaattttcctaagatggaggaggatttggatggagcttacaagaaactcaaaactctaaacaccaaaaatcc 583  Q
    |||| ||||||||||||||||| ||||||||||  | ||||||||| ||||||||||||||| |||||||||||||||||||||| ||||||||||||||    
T  39624017 taactattagagatttttccttctcaactaattgccataagatggacgaggatttggatggatcttacaagaaactcaaaactctcaacaccaaaaatcc 39624116  T
Q  584 aaaagtgtcgaacaagagaaagtaagaatcataatccat 622  Q
     |||| ||||||||| |||||||||||||| | ||||||    
T  39624117 taaagggtcgaacaaaagaaagtaagaatctttatccat 39624155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 81; E-Value: 9e-38
Query Start/End: Original strand, 484 - 612
Target Start/End: Original strand, 13786814 - 13786941
Alignment:
Q  484 taacaattagagatttttccttttcaactaattttcctaagatggaggaggatttggatggagcttacaagaaactcaaaactctaaacaccaaaaatcc 583  Q
    |||| ||||||||||||||||| ||||||||||  | |||||||||||||||||||| |||| |||||||||||||||||||||| ||||||||||||||    
T  13786814 taactattagagatttttccttctcaactaattgccataagatggaggaggatttggttggatcttacaagaaactcaaaactctcaacaccaaaaatcc 13786913  T
Q  584 aaaagtgtcgaacaagagaaagtaagaat 612  Q
     |||| |||||| ||||||||||||||||    
T  13786914 taaag-gtcgaataagagaaagtaagaat 13786941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 81; E-Value: 9e-38
Query Start/End: Original strand, 484 - 612
Target Start/End: Complemental strand, 25807328 - 25807201
Alignment:
Q  484 taacaattagagatttttccttttcaactaattttcctaagatggaggaggatttggatggagcttacaagaaactcaaaactctaaacaccaaaaatcc 583  Q
    |||| ||||||||||||||||| ||||||||||  | |||||||||||||||||||| |||| |||||||||||||||||||||| ||||||||||||||    
T  25807328 taactattagagatttttccttctcaactaattgccataagatggaggaggatttggttggatcttacaagaaactcaaaactctcaacaccaaaaatcc 25807229  T
Q  584 aaaagtgtcgaacaagagaaagtaagaat 612  Q
     |||| |||||| ||||||||||||||||    
T  25807228 taaag-gtcgaataagagaaagtaagaat 25807201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 524 - 622
Target Start/End: Complemental strand, 22912171 - 22912075
Alignment:
Q  524 gatggaggaggatttggatggagcttacaagaaactcaaaactctaaacaccaaaaatccaaaagtgtcgaacaagagaaagtaagaatcataatccat 622  Q
    |||||||||||||||||||||| ||||  |||||||||||||||| ||||||||||||   |||| |||||||||||||||||||||||| | ||||||    
T  22912171 gatggaggaggatttggatggatctta--agaaactcaaaactctcaacaccaaaaattataaagggtcgaacaagagaaagtaagaatctttatccat 22912075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0516 (Bit Score: 83; Significance: 5e-39; HSPs: 2)
Name: scaffold0516
Description:

Target: scaffold0516; HSP #1
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 484 - 622
Target Start/End: Original strand, 3833 - 3971
Alignment:
Q  484 taacaattagagatttttccttttcaactaattttcctaagatggaggaggatttggatggagcttacaagaaactcaaaactctaaacaccaaaaatcc 583  Q
    |||| ||||| || |||||||| ||||||||||  | |||||||||||| ||||||||||||||| ||||||||||||||||||| ||||||||||||||    
T  3833 taactattagggacttttccttctcaactaattgccataagatggaggaagatttggatggagctgacaagaaactcaaaactctcaacaccaaaaatcc 3932  T
Q  584 aaaagtgtcgaacaagagaaagtaagaatcataatccat 622  Q
    ||||| ||||||||||| |||||||||||| | ||||||    
T  3933 aaaagggtcgaacaagaaaaagtaagaatctttatccat 3971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0516; HSP #2
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 489 - 611
Target Start/End: Original strand, 4065 - 4185
Alignment:
Q  489 attagagatttttccttttcaactaattttcctaagatggaggaggatttggatggagcttacaagaaactc-aaaactctaaacaccaaaaatccaaaa 587  Q
    |||| ||||| |||||| ||||||||||  | |||||||||||| ||||||||||||||||||   |||||| |||||||| ||||||||||||||||||    
T  4065 attaaagattcttccttctcaactaattgccataagatggaggaagatttggatggagcttac---aaactcaaaaactctcaacaccaaaaatccaaaa 4161  T
Q  588 gtgtcgaacaagagaaagtaagaa 611  Q
    |  || ||||||||||||||||||    
T  4162 ggatcaaacaagagaaagtaagaa 4185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 83; Significance: 5e-39; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 484 - 622
Target Start/End: Original strand, 4138858 - 4138996
Alignment:
Q  484 taacaattagagatttttccttttcaactaattttcctaagatggaggaggatttggatggagcttacaagaaactcaaaactctaaacaccaaaaatcc 583  Q
    |||| ||||||||||||||||| |||||||||| || |||||||||||||||||  |||||| |||||||||||||||||| ||| |||||||||| |||    
T  4138858 taactattagagatttttccttctcaactaattgtcataagatggaggaggattgagatggatcttacaagaaactcaaaaatctcaacaccaaaattcc 4138957  T
Q  584 aaaagtgtcgaacaagagaaagtaagaatcataatccat 622  Q
     |||| |||||||||||||||||||||||| | ||||||    
T  4138958 taaagggtcgaacaagagaaagtaagaatctttatccat 4138996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 484 - 622
Target Start/End: Original strand, 10186929 - 10187067
Alignment:
Q  484 taacaattagagatttttccttttcaactaattttcctaagatggaggaggatttggatggagcttacaagaaactcaaaactctaaacaccaaaaatcc 583  Q
    |||| |||||||||||| |||| ||||||||||  | ||||||||||||||||| ||||||| |||||||||||||||||||||| |||||||||| |||    
T  10186929 taactattagagattttcccttctcaactaattgccataagatggaggaggattaggatggatcttacaagaaactcaaaactctcaacaccaaaattcc 10187028  T
Q  584 aaaagtgtcgaacaagagaaagtaagaatcataatccat 622  Q
     |||| |||||||||||||||||||||||| | ||||||    
T  10187029 taaagggtcgaacaagagaaagtaagaatctttatccat 10187067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 489 - 622
Target Start/End: Complemental strand, 918547 - 918414
Alignment:
Q  489 attagagatttttccttttcaactaattttcctaagatggaggaggatttggatggagcttacaagaaactcaaaactctaaacaccaaaaatccaaaag 588  Q
    ||||||||||||||||| || ||||||| || |||||| ||||||||||||| |||| |||||||||||||||||||||| |||||||||||||| ||||    
T  918547 attagagatttttccttctcgactaattgtcataagatagaggaggatttggttggatcttacaagaaactcaaaactctcaacaccaaaaatcctaaag 918448  T
Q  589 tgtcgaacaagagaaagtaagaatcataatccat 622  Q
     ||||||||||||||| |||||||| | ||||||    
T  918447 ggtcgaacaagagaaattaagaatctttatccat 918414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 484 - 622
Target Start/End: Original strand, 20172529 - 20172667
Alignment:
Q  484 taacaattagagatttttccttttcaactaattttcctaagatggaggaggatttggatggagcttacaagaaactcaaaactctaaacaccaaaaatcc 583  Q
    |||| |||||| |||||||||| ||||||||||  | |||||||||||||||||| |||| |||||||||||||||||||||||| |||| |||||||||    
T  20172529 taactattagatatttttccttctcaactaattgccataagatggaggaggattttgatgaagcttacaagaaactcaaaactctcaacatcaaaaatcc 20172628  T
Q  584 aaaagtgtcgaacaagagaaagtaagaatcataatccat 622  Q
     |||| ||||||||||||||| |||||||| | ||||||    
T  20172629 taaagggtcgaacaagagaaactaagaatctttatccat 20172667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 540 - 622
Target Start/End: Complemental strand, 11427672 - 11427590
Alignment:
Q  540 gatggagcttacaagaaactcaaaactctaaacaccaaaaatccaaaagtgtcgaacaagagaaagtaagaatcataatccat 622  Q
    ||||||||||||||||||||||||||||| |||| |||||||||  ||| ||||||||||| ||| |||||||| | ||||||    
T  11427672 gatggagcttacaagaaactcaaaactctcaacatcaaaaatcctgaagggtcgaacaagataaactaagaatctttatccat 11427590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0084 (Bit Score: 82; Significance: 2e-38; HSPs: 2)
Name: scaffold0084
Description:

Target: scaffold0084; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 484 - 613
Target Start/End: Original strand, 11468 - 11597
Alignment:
Q  484 taacaattagagatttttccttttcaactaattttcctaagatggaggaggatttggatggagcttacaagaaactcaaaactctaaacaccaaaaatcc 583  Q
    |||| ||||| ||||||||||| ||||||||||  | |||||||||||| ||||||||||||||| |||||||||| |||| ||| ||||||||||||||    
T  11468 taactattagggatttttccttctcaactaattcccataagatggaggaagatttggatggagctgacaagaaacttaaaagtctcaacaccaaaaatcc 11567  T
Q  584 aaaagtgtcgaacaagagaaagtaagaatc 613  Q
    ||||| ||||||||||||||||||||||||    
T  11568 aaaagggtcgaacaagagaaagtaagaatc 11597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0084; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 521 - 611
Target Start/End: Original strand, 13325 - 13417
Alignment:
Q  521 taagatggaggaggatttggatggagcttacaagaaa-ctcaaaa-ctctaaacaccaaaaatccaaaagtgtcgaacaagagaaagtaagaa 611  Q
    |||||||||||| ||||||||||||| || ||| ||| ||||||| |||| |||| ||||||||||||||  || ||||||||||||||||||    
T  13325 taagatggaggaagatttggatggaggttgcaaaaaaactcaaaaactctcaacaacaaaaatccaaaaggatcaaacaagagaaagtaagaa 13417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 81; Significance: 9e-38; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 81; E-Value: 9e-38
Query Start/End: Original strand, 484 - 612
Target Start/End: Complemental strand, 13433010 - 13432883
Alignment:
Q  484 taacaattagagatttttccttttcaactaattttcctaagatggaggaggatttggatggagcttacaagaaactcaaaactctaaacaccaaaaatcc 583  Q
    |||| ||||||||||||||||| ||||||||||  | |||||||||||||||||||| |||| |||||||||||||||||||||| ||||||||||||||    
T  13433010 taactattagagatttttccttctcaactaattgccataagatggaggaggatttggttggatcttacaagaaactcaaaactctcaacaccaaaaatcc 13432911  T
Q  584 aaaagtgtcgaacaagagaaagtaagaat 612  Q
     |||| |||||| ||||||||||||||||    
T  13432910 taaag-gtcgaataagagaaagtaagaat 13432883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 489 - 622
Target Start/End: Original strand, 18883132 - 18883266
Alignment:
Q  489 attagagatttttccttttcaactaattttcctaagatggaggaggatttggatggagcttacaagaaactcaaaac-tctaaacaccaaaaatccaaaa 587  Q
    ||||||||||||||||| ||||||||||  | ||||||||| ||||||||||||||| ||||||||||||||||||| ||| |||||||||||||| |||    
T  18883132 attagagatttttccttctcaactaattgccataagatggacgaggatttggatggatcttacaagaaactcaaaacttctcaacaccaaaaatcctaaa 18883231  T
Q  588 gtgtcgaacaagagaaagtaagaatcataatccat 622  Q
    | ||||||||| |||||||||||||| | ||||||    
T  18883232 gggtcgaacaaaagaaagtaagaatcttcatccat 18883266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 484 - 622
Target Start/End: Complemental strand, 16711678 - 16711541
Alignment:
Q  484 taacaattagagatttttccttttcaactaattttcctaagatggaggaggatttggatggagcttacaagaaactcaaaactctaaacaccaaaaatcc 583  Q
    |||| |||||| |||||||||| |||||||||| || |||||||||| | |||||||||||||||||||| |||||| ||||||| |||| |||||||||    
T  16711678 taactattagatatttttccttctcaactaattgtcataagatggagtaagatttggatggagcttacaa-aaactcgaaactctcaacatcaaaaatcc 16711580  T
Q  584 aaaagtgtcgaacaagagaaagtaagaatcataatccat 622  Q
     |||| ||||||||||||||| |||||||| | ||||||    
T  16711579 taaagcgtcgaacaagagaaactaagaatctttatccat 16711541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 81; Significance: 9e-38; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 81; E-Value: 9e-38
Query Start/End: Original strand, 484 - 612
Target Start/End: Original strand, 52350311 - 52350438
Alignment:
Q  484 taacaattagagatttttccttttcaactaattttcctaagatggaggaggatttggatggagcttacaagaaactcaaaactctaaacaccaaaaatcc 583  Q
    |||| ||||||||||||||||| ||||||||||  | |||||||||||||||||||| |||| |||||||||||||||||||||| ||||||||||||||    
T  52350311 taactattagagatttttccttctcaactaattgccataagatggaggaggatttggttggatcttacaagaaactcaaaactctcaacaccaaaaatcc 52350410  T
Q  584 aaaagtgtcgaacaagagaaagtaagaat 612  Q
     |||| |||||| ||||||||||||||||    
T  52350411 taaag-gtcgaataagagaaagtaagaat 52350438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 484 - 622
Target Start/End: Original strand, 26215887 - 26216025
Alignment:
Q  484 taacaattagagatttttccttttcaactaattttcctaagatggaggaggatttggatggagcttacaagaaactcaaaactctaaacaccaaaaatcc 583  Q
    |||| |||||| |||||||||| ||||||||||  | |||||||||||||||||| ||||||||||||||||||||||||||||| |||| |||||||||    
T  26215887 taactattagatatttttccttctcaactaattgccataagatggaggaggattttgatggagcttacaagaaactcaaaactctcaacatcaaaaatcc 26215986  T
Q  584 aaaagtgtcgaacaagagaaagtaagaatcataatccat 622  Q
     |||  ||||||||||||||| |||||||| | ||||||    
T  26215987 taaatggtcgaacaagagaaactaagaatctttatccat 26216025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 484 - 622
Target Start/End: Original strand, 48266833 - 48266971
Alignment:
Q  484 taacaattagagatttttccttttcaactaattttcctaagatggaggaggatttggatggagcttacaagaaactcaaaactctaaacaccaaaaatcc 583  Q
    |||| ||||||||||||||||| ||||||||||  | ||||||||||||| |||||| | || |||||||||||||||||||||| ||||||||||||||    
T  48266833 taactattagagatttttccttctcaactaattgccataagatggaggagcatttggtttgatcttacaagaaactcaaaactctcaacaccaaaaatcc 48266932  T
Q  584 aaaagtgtcgaacaagagaaagtaagaatcataatccat 622  Q
     |||| ||||||||||||||||||| |||| | ||||||    
T  48266933 taaagggtcgaacaagagaaagtaataatctttatccat 48266971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 484 - 622
Target Start/End: Original strand, 35870921 - 35871057
Alignment:
Q  484 taacaattagagatttttccttttcaactaattttcctaagatggaggaggatttggatggagcttacaagaaactcaaaactctaaacaccaaaaatcc 583  Q
    |||| ||||||||||||||||| ||||||||||  | |||||||||||||||||||| |||| ||||||||||||||  |||||| ||||||||||||||    
T  35870921 taactattagagatttttccttctcaactaattgccataagatggaggaggatttggttggatcttacaagaaactc--aactctcaacaccaaaaatcc 35871018  T
Q  584 aaaagtgtcgaacaagagaaagtaagaatcataatccat 622  Q
     |||| |||||| ||||||||||||||||| | ||||||    
T  35871019 taaagggtcgaataagagaaagtaagaatctttatccat 35871057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 77; Significance: 2e-35; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 484 - 612
Target Start/End: Original strand, 36991626 - 36991753
Alignment:
Q  484 taacaattagagatttttccttttcaactaattttcctaagatggaggaggatttggatggagcttacaagaaactcaaaactctaaacaccaaaaatcc 583  Q
    |||| ||||||||||||||||| ||||||||||  | ||||| |||||||||||||| |||| |||||||||||||||||||||| ||||||||||||||    
T  36991626 taactattagagatttttccttctcaactaattgccataagaaggaggaggatttggttggatcttacaagaaactcaaaactctcaacaccaaaaatcc 36991725  T
Q  584 aaaagtgtcgaacaagagaaagtaagaat 612  Q
     |||| |||||| ||||||||||||||||    
T  36991726 taaag-gtcgaataagagaaagtaagaat 36991753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 484 - 612
Target Start/End: Complemental strand, 37301477 - 37301349
Alignment:
Q  484 taacaattagagatttttccttttcaactaattttcctaagatggaggaggatttggatggagcttacaagaaactcaaaactctaaacaccaaaaatcc 583  Q
    |||| |||||||||||||| || | | |||||| || ||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||     
T  37301477 taactattagagatttttcattcttagctaattgtcataagatggaggaggatttggatggatcttacaagaaactcaaaactctcaacaccaaaaatca 37301378  T
Q  584 aaaagtgtcgaacaagagaaagtaagaat 612  Q
     |||| |||||| |||| |||||||||||    
T  37301377 gaaagggtcgaaaaagataaagtaagaat 37301349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 484 - 622
Target Start/End: Complemental strand, 21604693 - 21604556
Alignment:
Q  484 taacaattagagatttttccttttcaactaattttcctaagatggaggaggatttggatggagcttacaagaaactcaaaactctaaacaccaaaaatcc 583  Q
    |||| ||||||||||||||||| ||||||||||  | || |||||||||||||||||  ||| |||||   |||||||||||||| |||||||||||||     
T  21604693 taactattagagatttttccttctcaactaattgccata-gatggaggaggatttggtaggatcttactcaaaactcaaaactctcaacaccaaaaatct 21604595  T
Q  584 aaaagtgtcgaacaagagaaagtaagaatcataatccat 622  Q
     |||  |||||||||||||||||||||||| | ||||||    
T  21604594 taaacggtcgaacaagagaaagtaagaatctttatccat 21604556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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