View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17990_high_4 (Length: 585)

Name: NF17990_high_4
Description: NF17990
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17990_high_4
NF17990_high_4
[»] chr5 (14 HSPs)
chr5 (392-568)||(6796331-6796507)
chr5 (1-145)||(6796584-6796728)
chr5 (159-236)||(16594271-16594345)
chr5 (159-236)||(25603560-25603635)
chr5 (159-236)||(13739538-13739615)
chr5 (159-236)||(21575637-21575714)
chr5 (159-231)||(26009134-26009205)
chr5 (170-236)||(27546432-27546497)
chr5 (159-236)||(16967370-16967447)
chr5 (159-236)||(5899779-5899856)
chr5 (292-334)||(16594401-16594443)
chr5 (292-334)||(41173256-41173298)
chr5 (159-236)||(10008409-10008484)
chr5 (159-236)||(13332417-13332496)
[»] chr6 (9 HSPs)
chr6 (157-234)||(10729675-10729752)
chr6 (157-236)||(28982531-28982610)
chr6 (159-236)||(34383750-34383827)
chr6 (157-236)||(5456740-5456819)
chr6 (177-236)||(2204313-2204372)
chr6 (159-236)||(354374-354450)
chr6 (292-336)||(28982664-28982708)
chr6 (292-339)||(17181961-17182008)
chr6 (292-338)||(354276-354322)
[»] chr3 (25 HSPs)
chr3 (157-236)||(37143205-37143282)
chr3 (159-237)||(31350498-31350576)
chr3 (157-236)||(31425632-31425711)
chr3 (161-236)||(46114255-46114330)
chr3 (157-236)||(31930925-31931004)
chr3 (157-223)||(31664722-31664788)
chr3 (159-236)||(49875896-49875972)
chr3 (157-236)||(15927485-15927564)
chr3 (159-236)||(41610417-41610494)
chr3 (159-236)||(33976286-33976363)
chr3 (157-236)||(50886294-50886371)
chr3 (159-234)||(1291619-1291694)
chr3 (159-236)||(43898665-43898742)
chr3 (159-236)||(50886496-50886573)
chr3 (161-236)||(36639203-36639278)
chr3 (293-340)||(31425532-31425579)
chr3 (291-338)||(37143121-37143168)
chr3 (292-338)||(15927620-15927666)
chr3 (159-236)||(4617778-4617855)
chr3 (293-338)||(31931045-31931090)
chr3 (161-236)||(23553485-23553560)
chr3 (292-334)||(49875800-49875842)
chr3 (301-338)||(31664624-31664661)
chr3 (159-208)||(34608229-34608278)
chr3 (159-236)||(35987013-35987090)
[»] chr7 (12 HSPs)
chr7 (159-236)||(2819355-2819432)
chr7 (159-236)||(12651214-12651291)
chr7 (159-234)||(18736106-18736180)
chr7 (159-236)||(19223548-19223625)
chr7 (157-207)||(48591154-48591204)
chr7 (159-236)||(11778680-11778757)
chr7 (159-236)||(44255789-44255866)
chr7 (181-236)||(9792870-9792925)
chr7 (291-338)||(48814832-48814879)
chr7 (159-212)||(17117050-17117103)
chr7 (181-233)||(41750209-41750261)
chr7 (291-335)||(2819256-2819300)
[»] chr1 (15 HSPs)
chr1 (157-236)||(46859532-46859611)
chr1 (159-236)||(5466227-5466304)
chr1 (157-236)||(36775207-36775286)
chr1 (159-236)||(38762208-38762285)
chr1 (159-236)||(38289666-38289743)
chr1 (291-338)||(18982519-18982566)
chr1 (159-237)||(4604712-4604790)
chr1 (159-236)||(29936844-29936921)
chr1 (159-236)||(35414468-35414545)
chr1 (159-236)||(41411058-41411135)
chr1 (159-236)||(49660069-49660146)
chr1 (298-338)||(36775072-36775112)
chr1 (157-236)||(18982605-18982684)
chr1 (292-338)||(46859418-46859464)
chr1 (291-332)||(36775112-36775153)
[»] scaffold0481 (1 HSPs)
scaffold0481 (159-236)||(1093-1170)
[»] chr4 (9 HSPs)
chr4 (159-236)||(3698415-3698492)
chr4 (159-212)||(54128172-54128225)
chr4 (159-236)||(23719413-23719490)
chr4 (159-236)||(54342884-54342961)
chr4 (159-223)||(4700013-4700077)
chr4 (159-202)||(4272460-4272503)
chr4 (159-236)||(12706266-12706343)
chr4 (188-233)||(37989187-37989232)
chr4 (204-236)||(7146069-7146101)
[»] chr8 (11 HSPs)
chr8 (159-236)||(12171982-12172060)
chr8 (159-236)||(12416410-12416488)
chr8 (166-236)||(40649566-40649636)
chr8 (159-236)||(12946520-12946597)
chr8 (159-219)||(44952746-44952806)
chr8 (159-208)||(7612101-7612150)
chr8 (159-236)||(10309773-10309850)
chr8 (159-234)||(36023186-36023261)
chr8 (291-337)||(21514961-21515007)
chr8 (198-236)||(31266165-31266203)
chr8 (159-236)||(44712528-44712605)
[»] chr2 (5 HSPs)
chr2 (159-236)||(36003456-36003533)
chr2 (159-236)||(41317299-41317376)
chr2 (159-236)||(4969426-4969504)
chr2 (161-236)||(7438670-7438745)
chr2 (161-236)||(40209962-40210037)


Alignment Details
Target: chr5 (Bit Score: 152; Significance: 3e-80; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 392 - 568
Target Start/End: Complemental strand, 6796507 - 6796331
Alignment:
Q  392 tggaaccaaccacggttcaatccagttcaaccagactgcaatacaatcaagatcaaaccagctgacaaactggccaattttgaaaacaatgatttacaca 491  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6796507 tggaaccaaccacggttcaatccagttcaaccagactgcaatacaatcaagatcaaaccagctgacaaactggccaattttgaaaacaatgatttacaca 6796408  T
Q  492 cataaaggtactcaatgcagatcataaagcaaagaaattgaatcnnnnnnncataaataaaacctcaccatgttagt 568  Q
     |||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||    
T  6796407 tataaaggtactcaatgcagatcataaagcaaagaaattgaatcaaaaaaacataaataaaacctcaccatgttagt 6796331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 1 - 145
Target Start/End: Complemental strand, 6796728 - 6796584
Alignment:
Q  1 aaccaacaagtaatgcgaacaaatagaaaaacatacaaaagaaaacacaagtttacttcatatcaatgttttaaaaatcggacgaaagatcaaactattg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6796728 aaccaacaagtaatgcgaacaaatagaaaaacatacaaaagaaaacacaagtttacttcatatcaatgttttaaaaatcggacgaaagatcaaactattg 6796629  T
Q  101 agacctctggaggtcatggtttaattagttcaaaagtggttgaac 145  Q
    |||||||| ||||||||||||||||||||||||||||||||||||    
T  6796628 agacctctagaggtcatggtttaattagttcaaaagtggttgaac 6796584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 159 - 236
Target Start/End: Original strand, 16594271 - 16594345
Alignment:
Q  159 aatgatattttgacaactaatttcaaacaacttttagtgacaacctttttcctctctttttattgaacaataacaata 236  Q
    ||||||||||||||||| ||||||   ||| ||||||||||||| | |||||||||||||||||| ||||||||||||    
T  16594271 aatgatattttgacaaccaatttc---caatttttagtgacaacttatttcctctctttttattggacaataacaata 16594345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 159 - 236
Target Start/End: Original strand, 25603560 - 25603635
Alignment:
Q  159 aatgatattttgacaactaatttcaaacaacttttagtgacaacctttttcctctctttttattgaacaataacaata 236  Q
    ||||||||||||||||| |||||| ||||| ||||||||| ||| ||||||  |||||||||||| ||||||||||||    
T  25603560 aatgatattttgacaaccaatttctaacaatttttagtgataacatttttc--ctctttttattggacaataacaata 25603635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 159 - 236
Target Start/End: Complemental strand, 13739615 - 13739538
Alignment:
Q  159 aatgatattttgacaactaatttcaaacaacttttagtgacaacctttttcctctctttttattgaacaataacaata 236  Q
    ||||||||||||||||| || || ||||||||||||| |||||||||||| ||  |||||||||| ||||||| ||||    
T  13739615 aatgatattttgacaaccaactttaaacaacttttagggacaaccttttttcttcctttttattggacaataataata 13739538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 159 - 236
Target Start/End: Original strand, 21575637 - 21575714
Alignment:
Q  159 aatgatattttgacaactaatttcaaacaacttttagtgacaacctttttcctctctttttattgaacaataacaata 236  Q
    ||||||||||||||||| ||||| ||||||| |||||||||||| |||||||||  || ||| || ||||||||||||    
T  21575637 aatgatattttgacaaccaattttaaacaacatttagtgacaacatttttcctccgttcttaatggacaataacaata 21575714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 159 - 231
Target Start/End: Original strand, 26009134 - 26009205
Alignment:
Q  159 aatgatattttgacaactaatttcaaacaacttttagtgacaacctttttcctctctttttattgaacaataa 231  Q
    ||||||||||||||||  ||||| ||||||||||||||||||||| ||||||||| || |||||| |||||||    
T  26009134 aatgatattttgacaatcaattttaaacaacttttagtgacaacc-ttttcctcttttcttattggacaataa 26009205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 170 - 236
Target Start/End: Complemental strand, 27546497 - 27546432
Alignment:
Q  170 gacaactaatttcaaacaacttttagtgacaacctttttcctctctttttattgaacaataacaata 236  Q
    |||||| ||||| |||||| |||| |||||||| ||||||||||||||| |||||||||||||||||    
T  27546497 gacaaccaattttaaacaa-ttttcgtgacaacttttttcctctcttttcattgaacaataacaata 27546432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 159 - 236
Target Start/End: Original strand, 16967370 - 16967447
Alignment:
Q  159 aatgatattttgacaactaatttcaaacaacttttagtgacaacctttttcctctctttttattgaacaataacaata 236  Q
    ||||||||||||||| |||||||  |||||||||||| |||||| |||||||||| || |||||| |  |||||||||    
T  16967370 aatgatattttgacatctaattttcaacaacttttagggacaacatttttcctctattcttattggatgataacaata 16967447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 159 - 236
Target Start/End: Original strand, 5899779 - 5899856
Alignment:
Q  159 aatgatattttgacaactaatttcaaacaacttttagtgacaacctttt-tcctctctttttattgaacaataacaata 236  Q
    ||||||||||||||||| ||  |||||||| |||||||||| ||||||| ||||||||| |||||| | ||||||||||    
T  5899779 aatgatattttgacaaccaaaatcaaacaa-ttttagtgactaccttttttcctctcttcttattggataataacaata 5899856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 292 - 334
Target Start/End: Original strand, 16594401 - 16594443
Alignment:
Q  292 gttgttacaaaagttgttaaaaaatggatgtttagatatcatt 334  Q
    ||||| |||||||||||||||||||||||||| | ||||||||    
T  16594401 gttgtcacaaaagttgttaaaaaatggatgttcaaatatcatt 16594443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 292 - 334
Target Start/End: Complemental strand, 41173298 - 41173256
Alignment:
Q  292 gttgttacaaaagttgttaaaaaatggatgtttagatatcatt 334  Q
    ||||||||||||||||| | |||||||||||||| ||||||||    
T  41173298 gttgttacaaaagttgtcacaaaatggatgtttaaatatcatt 41173256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 159 - 236
Target Start/End: Original strand, 10008409 - 10008484
Alignment:
Q  159 aatgatattttgacaactaatttcaaacaacttttagtgacaacctttttcctctctttttattgaacaataacaata 236  Q
    |||||||||| |||||| ||||  |||||||||| |||||||||||||||  |||||  |||||| ||||||||||||    
T  10008409 aatgatatttggacaaccaattgtaaacaacttt-agtgacaaccttttt-ttctctccttattggacaataacaata 10008484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 159 - 236
Target Start/End: Complemental strand, 13332496 - 13332417
Alignment:
Q  159 aatgatattttgacaactaatttcaaacaacttttagtgacaacctttttc--ctctctttttattgaacaataacaata 236  Q
    ||||||||||||| ||| ||||| |||||||||||  ||| ||  ||||||  ||||||| |||||| ||||||||||||    
T  13332496 aatgatattttgataaccaattttaaacaactttttatgataatttttttcttctctcttcttattggacaataacaata 13332417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 62; Significance: 2e-26; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 157 - 234
Target Start/End: Complemental strand, 10729752 - 10729675
Alignment:
Q  157 gtaatgatattttgacaactaatttcaaacaacttttagtgacaacctttttcctctctttttattgaacaataacaa 234  Q
    ||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||| || ||||||||||    
T  10729752 gtaatgatattttgacaaccaatttccaacaacttttagtgacaacctttttcctctctttttactggacaataacaa 10729675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 157 - 236
Target Start/End: Original strand, 28982531 - 28982610
Alignment:
Q  157 gtaatgatattttgacaactaatttcaaacaacttttagtgacaacctttttcctctctttttattgaacaataacaata 236  Q
    ||||||||||||||||||| |||||  |||||||||||||||||||||||||||||||||||||||| ||||||| ||||    
T  28982531 gtaatgatattttgacaaccaattttcaacaacttttagtgacaacctttttcctctctttttattggacaataataata 28982610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 159 - 236
Target Start/End: Original strand, 34383750 - 34383827
Alignment:
Q  159 aatgatattttgacaactaatttcaaacaacttttagtgacaacctttttcctctctttttattgaacaataacaata 236  Q
    ||||||||||||||| | |||||| |||||||||||||||||||| ||||||||||||||||||| ||||||||||||    
T  34383750 aatgatattttgacatccaatttctaacaacttttagtgacaacccttttcctctctttttattggacaataacaata 34383827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 157 - 236
Target Start/End: Original strand, 5456740 - 5456819
Alignment:
Q  157 gtaatgatattttgacaactaatttcaaacaacttttagtgacaacctttttcctctctttttattgaacaataacaata 236  Q
    ||||||||||||||||||| |||||| ||||||||||||||| ||| ||||| | |||||||||||| ||||||||||||    
T  5456740 gtaatgatattttgacaaccaatttccaacaacttttagtgataacattttttcgctctttttattggacaataacaata 5456819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 177 - 236
Target Start/End: Original strand, 2204313 - 2204372
Alignment:
Q  177 aatttcaaacaacttttagtgacaacctttttcctctctttttattgaacaataacaata 236  Q
    |||||| |||||||||||||||||||||||||||||||||||||||| ||||||| ||||    
T  2204313 aatttccaacaacttttagtgacaacctttttcctctctttttattggacaataataata 2204372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 159 - 236
Target Start/End: Complemental strand, 354450 - 354374
Alignment:
Q  159 aatgatattttgacaactaatttcaaacaacttttagtgacaacctttttcctctctttttattgaacaataacaata 236  Q
    ||||||||||||||||| |||||| |||||||||||  || ||  ||||||||||| |||||||| ||||||||||||    
T  354450 aatgatattttgacaaccaatttccaacaacttttaaggataatttttttcctctc-ttttattggacaataacaata 354374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 292 - 336
Target Start/End: Original strand, 28982664 - 28982708
Alignment:
Q  292 gttgttacaaaagttgttaaaaaatggatgtttagatatcattac 336  Q
    ||||| |||||||||||||||||||||||||| | ||||||||||    
T  28982664 gttgtcacaaaagttgttaaaaaatggatgttcaaatatcattac 28982708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 292 - 339
Target Start/End: Original strand, 17181961 - 17182008
Alignment:
Q  292 gttgttacaaaagttgttaaaaaatggatgtttagatatcattactcc 339  Q
    |||||||||||||||||| |||||||| |||||| |||||||| ||||    
T  17181961 gttgttacaaaagttgttcaaaaatggttgtttaaatatcatttctcc 17182008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 292 - 338
Target Start/End: Complemental strand, 354322 - 354276
Alignment:
Q  292 gttgttacaaaagttgttaaaaaatggatgtttagatatcattactc 338  Q
    ||||| |||||||||||||||||||||||||| | | ||||||||||    
T  354322 gttgtcacaaaagttgttaaaaaatggatgttcaaacatcattactc 354276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 61; Significance: 7e-26; HSPs: 25)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 157 - 236
Target Start/End: Complemental strand, 37143282 - 37143205
Alignment:
Q  157 gtaatgatattttgacaactaatttcaaacaacttttagtgacaacctttttcctctctttttattgaacaataacaata 236  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||  |||||||||||| ||||||||||||    
T  37143282 gtaatgatattttgacaactaatttccaacaacttttagtgacaacctttttc--ctctttttattggacaataacaata 37143205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 159 - 237
Target Start/End: Original strand, 31350498 - 31350576
Alignment:
Q  159 aatgatattttgacaactaatttcaaacaacttttagtgacaacctttttcctctctttttattgaacaataacaatat 237  Q
    ||||||||||||||||| |||||| ||||||||||||||||||| ||||| |||||||||||||| |||||||||||||    
T  31350498 aatgatattttgacaaccaatttccaacaacttttagtgacaactttttttctctctttttattggacaataacaatat 31350576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 157 - 236
Target Start/End: Complemental strand, 31425711 - 31425632
Alignment:
Q  157 gtaatgatattttgacaactaatttcaaacaacttttagtgacaacctttttcctctctttttattgaacaataacaata 236  Q
    |||||||||||||||||||||||||  || || ||||| |||||||||||||||||||||||||||| ||||||||||||    
T  31425711 gtaatgatattttgacaactaattttcaataatttttaatgacaacctttttcctctctttttattggacaataacaata 31425632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 161 - 236
Target Start/End: Original strand, 46114255 - 46114330
Alignment:
Q  161 tgatattttgacaactaatttcaaacaacttttagtgacaacctttttcctctctttttattgaacaataacaata 236  Q
    ||||||||||||||  |||||| |||||||||| ||||||||||||||||||||||| ||||||||||||||||||    
T  46114255 tgatattttgacaatcaatttccaacaacttttggtgacaacctttttcctctctttctattgaacaataacaata 46114330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 157 - 236
Target Start/End: Original strand, 31930925 - 31931004
Alignment:
Q  157 gtaatgatattttgacaactaatttcaaacaacttttagtgacaacctttttcctctctttttattgaacaataacaata 236  Q
    ||||||||||||||||||| |||||| ||||| ||||||||| ||||||||||||||||||| |||| | ||||||||||    
T  31930925 gtaatgatattttgacaaccaatttccaacaaattttagtgataacctttttcctctcttttcattggagaataacaata 31931004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 157 - 223
Target Start/End: Complemental strand, 31664788 - 31664722
Alignment:
Q  157 gtaatgatattttgacaactaatttcaaacaacttttagtgacaacctttttcctctctttttattg 223  Q
    ||||||||||||||||||| |||||| ||||||||||||||| ||||||||||||||||||| ||||    
T  31664788 gtaatgatattttgacaaccaatttccaacaacttttagtgataacctttttcctctcttttcattg 31664722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 159 - 236
Target Start/End: Complemental strand, 49875972 - 49875896
Alignment:
Q  159 aatgatattttgacaactaatttcaaacaacttttagtgacaacctttttcctctctttttattgaacaataacaata 236  Q
    ||||||||||||||||| |||||| ||||||||||||||||||  ||||||||||||||| |||| ||||||||||||    
T  49875972 aatgatattttgacaaccaatttccaacaacttttagtgacaa-ttttttcctctcttttcattggacaataacaata 49875896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 157 - 236
Target Start/End: Original strand, 15927485 - 15927564
Alignment:
Q  157 gtaatgatattttgacaactaatttcaaacaacttttagtgacaacctttttcctctctttttattgaacaataacaata 236  Q
    ||||||||||||||||||| |||||| || || ||||||||||||| ||||| | |||||||||||| ||||||||||||    
T  15927485 gtaatgatattttgacaaccaatttccaataatttttagtgacaactttttttcgctctttttattggacaataacaata 15927564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 159 - 236
Target Start/End: Complemental strand, 41610494 - 41610417
Alignment:
Q  159 aatgatattttgacaactaatttcaaacaacttttagtgacaacctttttcctctctttttattgaacaataacaata 236  Q
    |||||||||||||| || ||||| ||||||||| |||||||||| ||||| |||||||||||||  ||||||||||||    
T  41610494 aatgatattttgactacaaattttaaacaacttctagtgacaacattttttctctctttttattagacaataacaata 41610417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 159 - 236
Target Start/End: Original strand, 33976286 - 33976363
Alignment:
Q  159 aatgatattttgacaactaatttcaaacaacttttagtgacaacctttttcctctctttttattgaacaataacaata 236  Q
    |||||||||||||||  ||||||  ||||| |||||||||||||  ||||||||||||||||||| | ||||||||||    
T  33976286 aatgatattttgacatttaattttcaacaatttttagtgacaacacttttcctctctttttattggataataacaata 33976363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 157 - 236
Target Start/End: Complemental strand, 50886371 - 50886294
Alignment:
Q  157 gtaatgatattttgacaactaatttcaaacaacttttagtgacaacctttttcctctctttttattgaacaataacaata 236  Q
    ||||||||||||||||||  |||||  ||||||||| ||||||||| ||||||  |||||||||||| ||||||||||||    
T  50886371 gtaatgatattttgacaatcaattttcaacaactttcagtgacaacgtttttc--ctctttttattggacaataacaata 50886294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 159 - 234
Target Start/End: Complemental strand, 1291694 - 1291619
Alignment:
Q  159 aatgatattttgacaactaatttcaaacaacttttagtgacaacctttttcctctctttttattgaacaataacaa 234  Q
    |||||||||||||||||||| ||  ||||| ||||||||| || ||||||| |||||||| |||| ||||||||||    
T  1291694 aatgatattttgacaactaaattttaacaatttttagtgataatctttttcttctcttttaattggacaataacaa 1291619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 159 - 236
Target Start/End: Complemental strand, 43898742 - 43898665
Alignment:
Q  159 aatgatattttgacaactaatttcaaacaacttttagtgacaacctttttcctctctttttattgaacaataacaata 236  Q
    ||||||||||||||||| | ||| |||||||||| | ||||||| ||||| || |||| |||||| ||||||||||||    
T  43898742 aatgatattttgacaacaatttttaaacaactttcattgacaactttttttctatcttcttattggacaataacaata 43898665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 159 - 236
Target Start/End: Complemental strand, 50886573 - 50886496
Alignment:
Q  159 aatgatattttgacaactaatttcaaacaacttttagtgacaacctttttcctctctttttattgaacaataacaata 236  Q
    ||||||||||||||||| ||||| | ||||||||  ||||||||||||||||||  || |||||| |||||| |||||    
T  50886573 aatgatattttgacaaccaattttagacaactttgggtgacaacctttttcctccattcttattggacaatagcaata 50886496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 161 - 236
Target Start/End: Complemental strand, 36639278 - 36639203
Alignment:
Q  161 tgatattttgacaactaatttcaaacaacttttagtgacaaccttttt-cctctctttttattgaacaataacaata 236  Q
    |||||||| |||||| |||||||||||||||| || |||||| ||||| ||||||||| ||||| ||||||||||||    
T  36639278 tgatatttggacaaccaatttcaaacaacttt-agggacaacattttttcctctctttctattggacaataacaata 36639203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 293 - 340
Target Start/End: Complemental strand, 31425579 - 31425532
Alignment:
Q  293 ttgttacaaaagttgttaaaaaatggatgtttagatatcattactcca 340  Q
    |||| |||||||||||||||||||||||||| | ||||||||||||||    
T  31425579 ttgtcacaaaagttgttaaaaaatggatgttcaaatatcattactcca 31425532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 291 - 338
Target Start/End: Complemental strand, 37143168 - 37143121
Alignment:
Q  291 ggttgttacaaaagttgttaaaaaatggatgtttagatatcattactc 338  Q
    |||||| |||||||||||||||||||||||||| | ||||||||||||    
T  37143168 ggttgtcacaaaagttgttaaaaaatggatgttcaaatatcattactc 37143121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 292 - 338
Target Start/End: Original strand, 15927620 - 15927666
Alignment:
Q  292 gttgttacaaaagttgttaaaaaatggatgtttagatatcattactc 338  Q
    |||||||||||||||||||||||||||||||| | |||| |||||||    
T  15927620 gttgttacaaaagttgttaaaaaatggatgttcaaatattattactc 15927666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 159 - 236
Target Start/End: Complemental strand, 4617855 - 4617778
Alignment:
Q  159 aatgatattttgacaactaatttcaaacaacttttagtgacaacctttttcctctctttttattgaacaataacaata 236  Q
    ||||||||||||||| | |||||||||||| |||   |||||   |||||||||| ||||||||| ||||||||||||    
T  4617855 aatgatattttgacatccaatttcaaacaattttggatgacagtttttttcctctatttttattggacaataacaata 4617778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 293 - 338
Target Start/End: Original strand, 31931045 - 31931090
Alignment:
Q  293 ttgttacaaaagttgttaaaaaatggatgtttagatatcattactc 338  Q
    |||| |||||||||||||||||||||||||| | ||||||||||||    
T  31931045 ttgtcacaaaagttgttaaaaaatggatgttcaaatatcattactc 31931090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 161 - 236
Target Start/End: Original strand, 23553485 - 23553560
Alignment:
Q  161 tgatattttgacaactaatttcaaacaacttttagtgacaacctttttc-ctctctttttattgaacaataacaata 236  Q
    |||||||| |||||| ||  |||||||||||| |||||||||||||||  ||||||||| |||| ||||||||||||    
T  23553485 tgatatttggacaaccaaaatcaaacaacttt-agtgacaacctttttttctctcttttcattggacaataacaata 23553560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 292 - 334
Target Start/End: Complemental strand, 49875842 - 49875800
Alignment:
Q  292 gttgttacaaaagttgttaaaaaatggatgtttagatatcatt 334  Q
    ||||| |||||||||||||||||||||||||| | ||||||||    
T  49875842 gttgtcacaaaagttgttaaaaaatggatgttaaaatatcatt 49875800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 301 - 338
Target Start/End: Complemental strand, 31664661 - 31664624
Alignment:
Q  301 aaagttgttaaaaaatggatgtttagatatcattactc 338  Q
    ||||||||||||||||||||||| | ||||||||||||    
T  31664661 aaagttgttaaaaaatggatgttcaaatatcattactc 31664624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 159 - 208
Target Start/End: Complemental strand, 34608278 - 34608229
Alignment:
Q  159 aatgatattttgacaactaatttcaaacaacttttagtgacaaccttttt 208  Q
    |||||||||||||||| |||||| ||||||||||||| || || ||||||    
T  34608278 aatgatattttgacaattaattttaaacaacttttagggataatcttttt 34608229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 159 - 236
Target Start/End: Complemental strand, 35987090 - 35987013
Alignment:
Q  159 aatgatattttgacaactaatttcaaacaacttttagtgacaacctttttcctctctttttattgaacaataacaata 236  Q
    ||||||||||||||||| |||||  ||||||||||| ||| || |||||| || | ||||||||  ||||||| ||||    
T  35987090 aatgatattttgacaaccaattttcaacaacttttaatgataaacttttttctttttttttattagacaataataata 35987013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 58; Significance: 4e-24; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 159 - 236
Target Start/End: Complemental strand, 2819432 - 2819355
Alignment:
Q  159 aatgatattttgacaactaatttcaaacaacttttagtgacaacctttttcctctctttttattgaacaataacaata 236  Q
    ||||||||||||||||| |||||  ||||| |||||||||||||||||||||||||||||||||| ||||||||||||    
T  2819432 aatgatattttgacaaccaattttcaacaatttttagtgacaacctttttcctctctttttattggacaataacaata 2819355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 159 - 236
Target Start/End: Original strand, 12651214 - 12651291
Alignment:
Q  159 aatgatattttgacaactaatttcaaacaacttttagtgacaacctttttcctctctttttattgaacaataacaata 236  Q
    ||||||||||||||||| |||||| |||||||||| |||||||| |||||||||| ||| ||||| ||||||||||||    
T  12651214 aatgatattttgacaaccaatttccaacaacttttggtgacaacttttttcctctttttctattggacaataacaata 12651291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 159 - 234
Target Start/End: Complemental strand, 18736180 - 18736106
Alignment:
Q  159 aatgatattttgacaactaatttcaaacaacttttagtgacaacctttttcctctctttttattgaacaataacaa 234  Q
    ||||||||||||| || |||||| |||||| |||||||||||||  ||||||||| ||||||||| ||||||||||    
T  18736180 aatgatattttgataaataattttaaacaatttttagtgacaactcttttcctct-tttttattggacaataacaa 18736106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 159 - 236
Target Start/End: Complemental strand, 19223625 - 19223548
Alignment:
Q  159 aatgatattttgacaactaatttcaaacaacttttagtgacaacctttttcctctctttttattgaacaataacaata 236  Q
    ||||||||||||||||  |||||  || || ||||| ||||||  |||||||||||||||||||| ||||||||||||    
T  19223625 aatgatattttgacaatcaattttcaataatttttaatgacaatttttttcctctctttttattggacaataacaata 19223548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 157 - 207
Target Start/End: Original strand, 48591154 - 48591204
Alignment:
Q  157 gtaatgatattttgacaactaatttcaaacaacttttagtgacaacctttt 207  Q
    ||||||||||||||||||| |||||| |||||||||  |||||||||||||    
T  48591154 gtaatgatattttgacaaccaatttccaacaactttgggtgacaacctttt 48591204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 159 - 236
Target Start/End: Complemental strand, 11778757 - 11778680
Alignment:
Q  159 aatgatattttgacaactaatttcaaacaacttttagtgacaacctttttcctctctttttattgaacaataacaata 236  Q
    ||||||||||||||||| ||||| ||||||||||||| |||||  ||||| ||  ||| |||||| ||||||| ||||    
T  11778757 aatgatattttgacaaccaattttaaacaacttttagggacaattttttttcttccttcttattggacaataataata 11778680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 159 - 236
Target Start/End: Original strand, 44255789 - 44255866
Alignment:
Q  159 aatgatattttgacaactaatttcaaacaacttttagtgacaacctttttcctctctttttattgaacaataacaata 236  Q
    ||||||||||||||||  ||||| ||| ||||||||| |||||||||||| ||  |||||||||| ||| ||| ||||    
T  44255789 aatgatattttgacaatcaattttaaataacttttagggacaaccttttttcttcctttttattggacagtaataata 44255866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 181 - 236
Target Start/End: Complemental strand, 9792925 - 9792870
Alignment:
Q  181 tcaaacaacttttagtgacaaccttttt-cctctctttttattgaacaataacaata 236  Q
    |||||||||||| ||||||||||||||| |||||||| |||||| ||||||||||||    
T  9792925 tcaaacaacttt-agtgacaaccttttttcctctcttcttattggacaataacaata 9792870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 291 - 338
Target Start/End: Original strand, 48814832 - 48814879
Alignment:
Q  291 ggttgttacaaaagttgttaaaaaatggatgtttagatatcattactc 338  Q
    |||||| |||||||||||||||||||| ||||| | ||||||||||||    
T  48814832 ggttgtcacaaaagttgttaaaaaatgaatgttcaaatatcattactc 48814879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 159 - 212
Target Start/End: Original strand, 17117050 - 17117103
Alignment:
Q  159 aatgatattttgacaactaatttcaaacaacttttagtgacaacctttttcctc 212  Q
    ||||||||||||||||| ||||| | |||| |||  ||||||||||||||||||    
T  17117050 aatgatattttgacaaccaattttagacaattttgggtgacaacctttttcctc 17117103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 181 - 233
Target Start/End: Complemental strand, 41750261 - 41750209
Alignment:
Q  181 tcaaacaacttttagtgacaaccttttt-cctctctttttattgaacaataaca 233  Q
    |||||||| ||||||||||||||||||| |||||||| |||||| |||||||||    
T  41750261 tcaaacaa-ttttagtgacaaccttttttcctctcttcttattggacaataaca 41750209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 291 - 335
Target Start/End: Complemental strand, 2819300 - 2819256
Alignment:
Q  291 ggttgttacaaaagttgttaaaaaatggatgtttagatatcatta 335  Q
    |||||| | |||||||||||||||||||||||| | |||||||||    
T  2819300 ggttgtcataaaagttgttaaaaaatggatgttcaaatatcatta 2819256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 52; Significance: 2e-20; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 157 - 236
Target Start/End: Complemental strand, 46859611 - 46859532
Alignment:
Q  157 gtaatgatattttgacaactaatttcaaacaacttttagtgacaacctttttcctctctttttattgaacaataacaata 236  Q
    |||||||||||| |||||| |||||| |||||||||||||||||  ||||||||||||||||||||  ||||||||||||    
T  46859611 gtaatgatatttagacaaccaatttccaacaacttttagtgacagtctttttcctctctttttattagacaataacaata 46859532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 159 - 236
Target Start/End: Original strand, 5466227 - 5466304
Alignment:
Q  159 aatgatattttgacaactaatttcaaacaacttttagtgacaacctttttcctctctttttattgaacaataacaata 236  Q
    ||||||||||||||||| ||||| ||||||||||  |||||||||||||||||| ||| |||||| ||||||||||||    
T  5466227 aatgatattttgacaaccaattttaaacaactttgggtgacaacctttttcctcacttcttattggacaataacaata 5466304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 157 - 236
Target Start/End: Complemental strand, 36775286 - 36775207
Alignment:
Q  157 gtaatgatattttgacaactaatttcaaacaacttttagtgacaacctttttcctctctttttattgaacaataacaata 236  Q
    ||||| ||||||||||||| |||||| |||||||||  |||||||||||||| |||| ||||||||| ||||||||||||    
T  36775286 gtaataatattttgacaaccaatttccaacaactttgggtgacaaccttttttctctttttttattggacaataacaata 36775207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 159 - 236
Target Start/End: Original strand, 38762208 - 38762285
Alignment:
Q  159 aatgatattttgacaactaatttcaaacaacttttagtgacaacctttttcctctctttttattgaacaataacaata 236  Q
    ||||||||||||||||| ||||| ||||||||||||| |||||||||||| ||  ||| |||||||||||||| ||||    
T  38762208 aatgatattttgacaaccaattttaaacaacttttagggacaaccttttttcttccttcttattgaacaataataata 38762285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 159 - 236
Target Start/End: Complemental strand, 38289743 - 38289666
Alignment:
Q  159 aatgatattttgacaactaatttcaaacaacttttagtgacaacctttttcctctctttttattgaacaataacaata 236  Q
    ||||||||||||||| | |||||  |||||||||||| |||||| ||||| |||| || |||||| ||||||||||||    
T  38289743 aatgatattttgacatcaaattttcaacaacttttagagacaactttttttctctattcttattggacaataacaata 38289666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 291 - 338
Target Start/End: Complemental strand, 18982566 - 18982519
Alignment:
Q  291 ggttgttacaaaagttgttaaaaaatggatgtttagatatcattactc 338  Q
    |||||| |||||||||||||||||||||||||| | ||||||||||||    
T  18982566 ggttgtcacaaaagttgttaaaaaatggatgttcaaatatcattactc 18982519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 159 - 237
Target Start/End: Complemental strand, 4604790 - 4604712
Alignment:
Q  159 aatgatattttgacaactaatttcaaacaacttttagtgacaacctttttcctctctttttattgaacaataacaatat 237  Q
    ||||||||||||||||| ||||| ||||||||||||| |||||| ||||| ||   || |||||| ||||||| |||||    
T  4604790 aatgatattttgacaaccaatttaaaacaacttttagggacaactttttttcttcattcttattggacaataataatat 4604712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 159 - 236
Target Start/End: Complemental strand, 29936921 - 29936844
Alignment:
Q  159 aatgatattttgacaactaatttcaaacaacttttagtgacaacctttttcctctctttttattgaacaataacaata 236  Q
    ||||||||||| ||||| ||||| ||||||||||  || ||||| |||||||||  || |||||||| ||||||||||    
T  29936921 aatgatattttaacaaccaattttaaacaactttgggtaacaacttttttcctccattcttattgaataataacaata 29936844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 159 - 236
Target Start/End: Original strand, 35414468 - 35414545
Alignment:
Q  159 aatgatattttgacaactaatttcaaacaacttttagtgacaacctttttcctctctttttattgaacaataacaata 236  Q
    ||||||||||||||| | ||||| ||| ||||||   ||||||| |||||||||| || |||||| ||||||||||||    
T  35414468 aatgatattttgacatccaattttaaataactttggatgacaacttttttcctctattcttattggacaataacaata 35414545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 159 - 236
Target Start/End: Complemental strand, 41411135 - 41411058
Alignment:
Q  159 aatgatattttgacaactaatttcaaacaacttttagtgacaacctttttcctctctttttattgaacaataacaata 236  Q
    ||||||||||||||| |||||||||||||  |||   ||||||| |||||||||  || |||||| ||||||||||||    
T  41411135 aatgatattttgacatctaatttcaaacagttttggatgacaacttttttcctccattcttattggacaataacaata 41411058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 159 - 236
Target Start/End: Complemental strand, 49660146 - 49660069
Alignment:
Q  159 aatgatattttgacaactaatttcaaacaacttttagtgacaacctttttcctctctttttattgaacaataacaata 236  Q
    ||||||||||||||| | |||| |||||||||||  |||||||| |||||||||| || |||||  ||||| ||||||    
T  49660146 aatgatattttgacatccaattccaaacaactttgggtgacaacttttttcctctattcttattagacaattacaata 49660069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 298 - 338
Target Start/End: Complemental strand, 36775112 - 36775072
Alignment:
Q  298 acaaaagttgttaaaaaatggatgtttagatatcattactc 338  Q
    |||||||||||||||||||||||||| | ||||||||||||    
T  36775112 acaaaagttgttaaaaaatggatgttcaaatatcattactc 36775072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 157 - 236
Target Start/End: Complemental strand, 18982684 - 18982605
Alignment:
Q  157 gtaatgatattttgacaactaatttcaaacaacttttagtgacaacctttttcctctctttttattgaacaataacaata 236  Q
    ||||||||||||||| ||| |||||| |||||||||  |||||||| |||||  ||| ||||||||| | || |||||||    
T  18982684 gtaatgatattttgataaccaatttccaacaactttgggtgacaacattttttatctttttttattggataacaacaata 18982605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 292 - 338
Target Start/End: Complemental strand, 46859464 - 46859418
Alignment:
Q  292 gttgttacaaaagttgttaaaaaatggatgtttagatatcattactc 338  Q
    ||||| |||||||||||||||||||||||| | | ||||||||||||    
T  46859464 gttgtcacaaaagttgttaaaaaatggatgctcaaatatcattactc 46859418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 291 - 332
Target Start/End: Complemental strand, 36775153 - 36775112
Alignment:
Q  291 ggttgttacaaaagttgttaaaaaatggatgtttagatatca 332  Q
    |||||| |||||||||||||||||||||||||| | ||||||    
T  36775153 ggttgtcacaaaagttgttaaaaaatggatgttcaaatatca 36775112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0481 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0481
Description:

Target: scaffold0481; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 159 - 236
Target Start/End: Original strand, 1093 - 1170
Alignment:
Q  159 aatgatattttgacaactaatttcaaacaacttttagtgacaacctttttcctctctttttattgaacaataacaata 236  Q
    ||||||||||||||||| ||||| ||||||||||  |||||||||||||||||| ||| |||||| ||||||||||||    
T  1093 aatgatattttgacaaccaattttaaacaactttgggtgacaacctttttcctcacttcttattggacaataacaata 1170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 50; Significance: 2e-19; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 159 - 236
Target Start/End: Complemental strand, 3698492 - 3698415
Alignment:
Q  159 aatgatattttgacaactaatttcaaacaacttttagtgacaacctttttcctctctttttattgaacaataacaata 236  Q
    ||||||||||  | |||||||||| ||||| ||||||||||||| |||||||||||||||||||| ||||||||||||    
T  3698492 aatgatatttgcataactaatttccaacaatttttagtgacaacttttttcctctctttttattggacaataacaata 3698415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 159 - 212
Target Start/End: Complemental strand, 54128225 - 54128172
Alignment:
Q  159 aatgatattttgacaactaatttcaaacaacttttagtgacaacctttttcctc 212  Q
    ||||||||||||||||| ||||| ||||||||||||||||||||||||||||||    
T  54128225 aatgatattttgacaaccaattttaaacaacttttagtgacaacctttttcctc 54128172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 159 - 236
Target Start/End: Original strand, 23719413 - 23719490
Alignment:
Q  159 aatgatattttgacaactaatttcaaacaacttttagtgacaacctttttcctctctttttattgaacaataacaata 236  Q
    ||||||||||||||||| ||||| |||||||||| | ||||||||||||||| |  || |||||  ||||||||||||    
T  23719413 aatgatattttgacaaccaatttgaaacaactttgaatgacaacctttttccgcctttcttattcgacaataacaata 23719490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 159 - 236
Target Start/End: Complemental strand, 54342961 - 54342884
Alignment:
Q  159 aatgatattttgacaactaatttcaaacaacttttagtgacaacctttttcctctctttttattgaacaataacaata 236  Q
    |||||||| |||||||| ||||| ||||||||||  ||||||||||| ||||||  || |||||| ||||||||||||    
T  54342961 aatgatatcttgacaaccaattttaaacaactttgggtgacaaccttgttcctcctttcttattggacaataacaata 54342884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 159 - 223
Target Start/End: Original strand, 4700013 - 4700077
Alignment:
Q  159 aatgatattttgacaactaatttcaaacaacttttagtgacaacctttttcctctctttttattg 223  Q
    |||||||||||||||| |||||| |||||||||||||||| ||  ||||||||||  ||||||||    
T  4700013 aatgatattttgacaattaattttaaacaacttttagtgataatttttttcctcttattttattg 4700077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 159 - 202
Target Start/End: Original strand, 4272460 - 4272503
Alignment:
Q  159 aatgatattttgacaactaatttcaaacaacttttagtgacaac 202  Q
    ||||||||||||||||| |||||| |||||||||||||||||||    
T  4272460 aatgatattttgacaaccaatttccaacaacttttagtgacaac 4272503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 159 - 236
Target Start/End: Complemental strand, 12706343 - 12706266
Alignment:
Q  159 aatgatattttgacaactaatttcaaacaacttttagtgacaaccttttt-cctctctttttattgaacaataacaata 236  Q
    ||||||||||  ||||| ||||| |||||  ||||| ||||||||||||| |||||||| | |||||||||||||||||    
T  12706343 aatgatatttgtacaaccaattttaaacatttttta-tgacaaccttttttcctctcttataattgaacaataacaata 12706266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 188 - 233
Target Start/End: Complemental strand, 37989232 - 37989187
Alignment:
Q  188 acttttagtgacaacctttttcctctctttttattgaacaataaca 233  Q
    ||||||||||| ||| ||||||| | ||||||||||||||||||||    
T  37989232 acttttagtgataacttttttccaccctttttattgaacaataaca 37989187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 204 - 236
Target Start/End: Original strand, 7146069 - 7146101
Alignment:
Q  204 tttttcctctctttttattgaacaataacaata 236  Q
    |||||||||||||||||||| ||||||||||||    
T  7146069 tttttcctctctttttattggacaataacaata 7146101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 1e-17; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 159 - 236
Target Start/End: Original strand, 12171982 - 12172060
Alignment:
Q  159 aatgatattttgacaactaatttcaaacaacttttagtgacaacctttttcctctcttttta-ttgaacaataacaata 236  Q
    ||||||||||||||||| ||||| |||||| ||||||||||||||||||||||| ||| ||| ||| ||||||||||||    
T  12171982 aatgatattttgacaaccaattttaaacaaattttagtgacaacctttttcctcccttcttatttggacaataacaata 12172060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 159 - 236
Target Start/End: Original strand, 12416410 - 12416488
Alignment:
Q  159 aatgatattttgacaactaatttcaaacaacttttagtgacaacctttttcctctcttttta-ttgaacaataacaata 236  Q
    ||||||||||||||||| ||||| |||||| ||||||||||||||||||||||| ||| ||| ||| ||||||||||||    
T  12416410 aatgatattttgacaaccaattttaaacaaattttagtgacaacctttttcctcccttcttatttggacaataacaata 12416488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 166 - 236
Target Start/End: Complemental strand, 40649636 - 40649566
Alignment:
Q  166 ttttgacaactaatttcaaacaacttttagtgacaacctttttcctctctttttattgaacaataacaata 236  Q
    |||||||||| |||||  ||||| |||||||||||||||||||||||| ||||||||| |||||| |||||    
T  40649636 ttttgacaaccaattttcaacaatttttagtgacaacctttttcctctatttttattggacaatagcaata 40649566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 159 - 236
Target Start/End: Original strand, 12946520 - 12946597
Alignment:
Q  159 aatgatattttgacaactaatttcaaacaacttttagtgacaacctttttcctctctttttattgaacaataacaata 236  Q
    ||||||||||||||| | |||||  |||||||||| | |||||| ||||| |||| ||||||||||||||| ||||||    
T  12946520 aatgatattttgacatccaattttcaacaactttttgggacaactttttttctctatttttattgaacaatgacaata 12946597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 159 - 219
Target Start/End: Complemental strand, 44952806 - 44952746
Alignment:
Q  159 aatgatattttgacaactaatttcaaacaacttttagtgacaacctttttcctctcttttt 219  Q
    ||||||||||||||||  |||||| ||||| |||||||||||| |||||| ||||||||||    
T  44952806 aatgatattttgacaatcaatttctaacaatttttagtgacaatcttttttctctcttttt 44952746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 159 - 208
Target Start/End: Original strand, 7612101 - 7612150
Alignment:
Q  159 aatgatattttgacaactaatttcaaacaacttttagtgacaaccttttt 208  Q
    ||||||||||||||||| ||||| ||||||||||||| ||||| ||||||    
T  7612101 aatgatattttgacaaccaattttaaacaacttttagggacaatcttttt 7612150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 159 - 236
Target Start/End: Original strand, 10309773 - 10309850
Alignment:
Q  159 aatgatattttgacaactaatttcaaacaacttttagtgacaacctttttcctctctttttattgaacaataacaata 236  Q
    ||||||||||||||||  ||||| |||||| |||  |||| ||||||||||||   ||||||||| ||||||||||||    
T  10309773 aatgatattttgacaatcaattttaaacaattttgggtgataacctttttccttcttttttattggacaataacaata 10309850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 159 - 234
Target Start/End: Complemental strand, 36023261 - 36023186
Alignment:
Q  159 aatgatattttgacaactaatttcaaacaacttttagtgacaacctttttcctctctttttattgaacaataacaa 234  Q
    ||||||||||||||||  ||||| ||| || |||  ||||||| |||||||||| ||||| |||| ||||||||||    
T  36023261 aatgatattttgacaatcaattttaaataattttgggtgacaatctttttcctcccttttaattggacaataacaa 36023186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 291 - 337
Target Start/End: Original strand, 21514961 - 21515007
Alignment:
Q  291 ggttgttacaaaagttgttaaaaaatggatgtttagatatcattact 337  Q
    |||||| |||||| ||||||||||||||||||| | |||||||||||    
T  21514961 ggttgtcacaaaaattgttaaaaaatggatgttcaaatatcattact 21515007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 198 - 236
Target Start/End: Original strand, 31266165 - 31266203
Alignment:
Q  198 acaacctttttcctctctttttattgaacaataacaata 236  Q
    ||||| |||||||||||||||||||| ||||||||||||    
T  31266165 acaacttttttcctctctttttattggacaataacaata 31266203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 159 - 236
Target Start/End: Complemental strand, 44712605 - 44712528
Alignment:
Q  159 aatgatattttgacaactaatttcaaacaacttttagtgacaacctttttcctctctttttattgaacaataacaata 236  Q
    ||||||||||| | ||| ||||| | ||||||||   |||||||||||||||||| || ||||||| ||||| |||||    
T  44712605 aatgatattttaataaccaattttagacaactttggatgacaacctttttcctctattcttattgagcaatagcaata 44712528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000009; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 159 - 236
Target Start/End: Original strand, 36003456 - 36003533
Alignment:
Q  159 aatgatattttgacaactaatttcaaacaacttttagtgacaacctttttcctctctttttattgaacaataacaata 236  Q
    |||||||||||||||  |||||||||| || |||  |||||||| ||||| |||  || |||||||||||||||||||    
T  36003456 aatgatattttgacatttaatttcaaataattttgggtgacaactttttttctccattcttattgaacaataacaata 36003533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 159 - 236
Target Start/End: Complemental strand, 41317376 - 41317299
Alignment:
Q  159 aatgatattttgacaactaatttcaaacaacttttagtgacaacctttttcctctctttttattgaacaataacaata 236  Q
    ||||||||||||||| | |||||  |||||||||| | ||||| |||||| |||| || |||||||||||| ||||||    
T  41317376 aatgatattttgacatccaattttcaacaactttttgggacaatcttttttctctattcttattgaacaatgacaata 41317299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 159 - 236
Target Start/End: Original strand, 4969426 - 4969504
Alignment:
Q  159 aatgatattttgacaactaatttcaaacaacttttagtgacaac-ctttttcctctctttttattgaacaataacaata 236  Q
    ||||||||||||||| | ||||||||||||||||   |||||||  |||||||| | || |||||| ||||||||||||    
T  4969426 aatgatattttgacatccaatttcaaacaactttggatgacaactttttttcctttattcttattggacaataacaata 4969504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 161 - 236
Target Start/End: Complemental strand, 7438745 - 7438670
Alignment:
Q  161 tgatattttgacaactaatttcaaacaacttttagtgacaacctttttc-ctctctttttattgaacaataacaata 236  Q
    ||||||||||||||| ||  | |||||||||| || ||||||||||||  ||||||||| |||| ||||||||||||    
T  7438745 tgatattttgacaaccaaaataaaacaacttt-agggacaacctttttttctctcttttcattggacaataacaata 7438670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 161 - 236
Target Start/End: Original strand, 40209962 - 40210037
Alignment:
Q  161 tgatattttgacaactaatttcaaacaacttttagtgacaacctttt-tcctctctttttattgaacaataacaata 236  Q
    |||||||| |||||| ||  |||||||| || || |||||||||||| ||||||||| |||||| ||||||||||||    
T  40209962 tgatatttggacaaccaaaatcaaacaa-ttctattgacaaccttttttcctctcttcttattggacaataacaata 40210037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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